Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-961P-201ENST00000363893 105 ntBASIC0.67□□□□□ -2.3
RFX3P48380 RNU6-342P-201ENST00000384521 104 ntBASIC0.67□□□□□ -2.3
RFX3P48380 Y_RNA.540-201ENST00000384638 111 ntBASIC0.67□□□□□ -2.3
RFX3P48380 Y_RNA.621-201ENST00000411065 96 ntBASIC0.67□□□□□ -2.3
RFX3P48380 RPS26P5-201ENST00000418544 335 ntBASIC0.67□□□□□ -2.3
RFX3P48380 PIGPP3-201ENST00000425307 415 ntBASIC0.67□□□□□ -2.3
RFX3P48380 FABP5P4-201ENST00000437203 171 ntBASIC0.67□□□□□ -2.3
RFX3P48380 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.67□□□□□ -2.3
RFX3P48380 AC114811.1-201ENST00000507207 168 ntBASIC0.67□□□□□ -2.3
RFX3P48380 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.67□□□□□ -2.3
RFX3P48380 AC084782.3-201ENST00000612282 578 ntBASIC0.67□□□□□ -2.3
RFX3P48380 AC025253.1-201ENST00000613623 543 ntBASIC0.67□□□□□ -2.3
RFX3P48380 AC117470.1-201ENST00000381974 330 ntBASIC0.66□□□□□ -2.3
RFX3P48380 MIR508-201ENST00000384857 115 ntBASIC0.66□□□□□ -2.3
RFX3P48380 SNORD78.2-201ENST00000391076 69 ntBASIC0.66□□□□□ -2.3
RFX3P48380 MIR1298-201ENST00000408783 112 ntBASIC0.66□□□□□ -2.3
RFX3P48380 RNU2-61P-201ENST00000411069 191 ntBASIC0.66□□□□□ -2.3
RFX3P48380 RPEP5-201ENST00000441137 268 ntBASIC0.66□□□□□ -2.3
RFX3P48380 PRDX4P1-201ENST00000507189 574 ntBASIC0.66□□□□□ -2.3
RFX3P48380 RNU6-911P-201ENST00000516523 104 ntBASIC0.66□□□□□ -2.3
RFX3P48380 AC005176.2-201ENST00000596933 147 ntBASIC0.66□□□□□ -2.3
RFX3P48380 AL008636.1-201ENST00000625038 1018 ntBASIC0.66□□□□□ -2.3
RFX3P48380 RNA5SP264-201ENST00000363115 107 ntBASIC0.65□□□□□ -2.31
RFX3P48380 RNU6-1188P-201ENST00000363795 107 ntBASIC0.65□□□□□ -2.31
RFX3P48380 Y_RNA.230-201ENST00000364348 109 ntBASIC0.65□□□□□ -2.31
RFX3P48380 RNU1-133P-201ENST00000364867 167 ntBASIC0.65□□□□□ -2.31
RFX3P48380 MIR136-201ENST00000385207 82 ntBASIC0.65□□□□□ -2.31
RFX3P48380 RNU6-192P-201ENST00000391253 100 ntBASIC0.65□□□□□ -2.31
RFX3P48380 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.65□□□□□ -2.31
RFX3P48380 AL035398.1-201ENST00000430869 322 ntBASIC0.65□□□□□ -2.31
RFX3P48380 MTND5P15-201ENST00000434246 349 ntBASIC0.65□□□□□ -2.31
RFX3P48380 Y_RNA.714-201ENST00000517065 90 ntBASIC0.65□□□□□ -2.31
RFX3P48380 SNORA74.3-201ENST00000517108 154 ntBASIC0.65□□□□□ -2.31
RFX3P48380 MIR3192-201ENST00000584920 77 ntBASIC0.65□□□□□ -2.31
RFX3P48380 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.64□□□□□ -2.31
RFX3P48380 Y_RNA.160-201ENST00000363677 92 ntBASIC0.64□□□□□ -2.31
RFX3P48380 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.64□□□□□ -2.31
RFX3P48380 RNU6-370P-201ENST00000411008 104 ntBASIC0.64□□□□□ -2.31
RFX3P48380 HMGN2P32-201ENST00000444648 269 ntBASIC0.64□□□□□ -2.31
RFX3P48380 CHEK2P4-201ENST00000450340 246 ntBASIC0.64□□□□□ -2.31
RFX3P48380 RPS20P10-201ENST00000451209 253 ntBASIC0.64□□□□□ -2.31
RFX3P48380 RNU6-1213P-201ENST00000517075 94 ntBASIC0.64□□□□□ -2.31
RFX3P48380 AC133485.1-201ENST00000567176 124 ntBASIC0.64□□□□□ -2.31
RFX3P48380 AC138907.6-201ENST00000568401 126 ntBASIC0.64□□□□□ -2.31
RFX3P48380 AL590095.2-201ENST00000604136 117 ntBASIC0.64□□□□□ -2.31
RFX3P48380 AC005972.2-201ENST00000604690 348 ntBASIC0.64□□□□□ -2.31
RFX3P48380 AC133104.2-201ENST00000615272 193 ntBASIC0.64□□□□□ -2.31
RFX3P48380 U6atac.1-201ENST00000616025 117 ntBASIC0.64□□□□□ -2.31
RFX3P48380 TPTEP1-208ENST00000636884 213 ntBASIC0.64□□□□□ -2.31
RFX3P48380 Y_RNA.101-201ENST00000363154 102 ntBASIC0.63□□□□□ -2.31
RFX3P48380 SNORD114-26-201ENST00000363543 72 ntBASIC0.63□□□□□ -2.31
RFX3P48380 Y_RNA.253-201ENST00000364562 112 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-1335P-201ENST00000365426 107 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-926P-201ENST00000384075 107 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-310P-201ENST00000384655 107 ntBASIC0.63□□□□□ -2.31
RFX3P48380 MIR522-201ENST00000385071 87 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-710P-201ENST00000410424 105 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU4-14P-201ENST00000410858 122 ntBASIC0.63□□□□□ -2.31
RFX3P48380 Y_RNA.646-201ENST00000410980 101 ntBASIC0.63□□□□□ -2.31
RFX3P48380 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.63□□□□□ -2.31
RFX3P48380 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU7-43P-201ENST00000516554 64 ntBASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-1012P-201ENST00000516606 109 ntBASIC0.63□□□□□ -2.31
RFX3P48380 AP003716.2-201ENST00000528260 108 ntBASIC0.63□□□□□ -2.31
RFX3P48380 AC055872.1-201ENST00000570978 278 ntBASIC0.63□□□□□ -2.31
RFX3P48380 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.63□□□□□ -2.31
RFX3P48380 AL353765.1-201ENST00000605514 183 ntBASIC0.63□□□□□ -2.31
RFX3P48380 AC022306.2-201ENST00000617563 647 ntBASIC0.63□□□□□ -2.31
RFX3P48380 SEPT14P17-201ENST00000617978 177 ntBASIC0.63□□□□□ -2.31
RFX3P48380 PVT1_3.1-201ENST00000620853 95 ntBASIC0.63□□□□□ -2.31
RFX3P48380 AC139792.2-201ENST00000624218 587 ntBASIC0.63□□□□□ -2.31
RFX3P48380 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
RFX3P48380 RNU6-1084P-201ENST00000362498 107 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNU6-626P-201ENST00000363354 107 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNU6-324P-201ENST00000363957 106 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNA5SP48-201ENST00000363969 126 ntBASIC0.62□□□□□ -2.31
RFX3P48380 snoU2-30.1-201ENST00000365012 70 ntBASIC0.62□□□□□ -2.31
RFX3P48380 SNORD14.1-201ENST00000365609 90 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNU6-20P-201ENST00000384106 107 ntBASIC0.62□□□□□ -2.31
RFX3P48380 Y_RNA.446-201ENST00000384178 104 ntBASIC0.62□□□□□ -2.31
RFX3P48380 SNORA72-201ENST00000384339 132 ntBASIC0.62□□□□□ -2.31
RFX3P48380 MIR520C-201ENST00000385005 87 ntBASIC0.62□□□□□ -2.31
RFX3P48380 PDCL2P1-201ENST00000419302 352 ntBASIC0.62□□□□□ -2.31
RFX3P48380 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.62□□□□□ -2.31
RFX3P48380 AC099799.1-201ENST00000439809 192 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNU6-470P-201ENST00000515954 104 ntBASIC0.62□□□□□ -2.31
RFX3P48380 RNU6-155P-201ENST00000516347 100 ntBASIC0.62□□□□□ -2.31
RFX3P48380 SNORD45.4-201ENST00000516629 73 ntBASIC0.62□□□□□ -2.31
RFX3P48380 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
RFX3P48380 RBM11P1-201ENST00000604951 799 ntBASIC0.62□□□□□ -2.31
RFX3P48380 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.62□□□□□ -2.31
RFX3P48380 AC068700.1-201ENST00000565862 3754 ntBASIC0.62□□□□□ -2.31
RFX3P48380 MIR103A2-201ENST00000362154 78 ntBASIC0.61□□□□□ -2.31
RFX3P48380 MT-TL1-201ENST00000386347 75 ntBASIC0.61□□□□□ -2.31
RFX3P48380 RNU6-131P-201ENST00000391144 107 ntBASIC0.61□□□□□ -2.31
RFX3P48380 Y_RNA.605-201ENST00000410577 105 ntBASIC0.61□□□□□ -2.31
RFX3P48380 RNU6-1199P-201ENST00000411249 104 ntBASIC0.61□□□□□ -2.31
RFX3P48380 MTND1P2-201ENST00000430604 821 ntBASIC0.61□□□□□ -2.31
RFX3P48380 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.61□□□□□ -2.31
RFX3P48380 RNU6-436P-201ENST00000516171 114 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms