Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 Y_RNA.143-201ENST00000363520 106 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 RNU6-1323P-201ENST00000384025 107 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXD13P35453 LINC01399-202ENST00000458450 244 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 Y_RNA.638-201ENST00000459374 113 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 SEPT14P8-201ENST00000508026 178 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 RNU6-966P-201ENST00000516479 104 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 SNORA70.22-201ENST00000517160 124 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 RNU6-165P-201ENST00000517170 99 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 AL353770.2-201ENST00000620024 78 ntBASIC1.33□□□□□ -2.2
HOXD13P35453 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
HOXD13P35453 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
HOXD13P35453 Y_RNA.172-201ENST00000363765 102 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 Y_RNA.253-201ENST00000364562 112 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 Y_RNA.368-201ENST00000365547 113 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 SNORA63.7-201ENST00000365579 123 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 SNORA25-201ENST00000384384 134 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 MIR222-201ENST00000384992 110 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 SNORD41-201ENST00000386967 70 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 MLLT10P1-201ENST00000418346 262 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 PIGPP3-201ENST00000425307 415 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 AC015922.2-201ENST00000435593 184 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 HMGN1P7-201ENST00000491722 313 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 AC114811.1-201ENST00000507207 168 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 RNU6-1116P-201ENST00000517269 99 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 FAM106DP-201ENST00000586416 501 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 SNORD113-5-201ENST00000607261 78 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 AC007485.1-201ENST00000616755 206 ntBASIC1.32□□□□□ -2.2
HOXD13P35453 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
HOXD13P35453 AC091812.1-201ENST00000432235 1948 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 Y_RNA.445-201ENST00000384168 102 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 RNU6-937P-201ENST00000384325 106 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 RNU6-131P-201ENST00000391144 107 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXD13P35453 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 RNU6-1054P-201ENST00000411293 104 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 HMGN2P32-201ENST00000444648 269 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 Y_RNA.639-201ENST00000458981 102 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 RNA5SP458-201ENST00000516188 119 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 POLR3GP1-201ENST00000594073 261 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 DEFB117-201ENST00000602356 141 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 AC007742.2-201ENST00000618226 398 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 AC090574.1-201ENST00000623186 233 ntBASIC1.31□□□□□ -2.2
HOXD13P35453 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXD13P35453 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.31□□□□□ -2.2
HOXD13P35453 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
HOXD13P35453 MIR369-201ENST00000362155 70 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 snoU2-30.1-201ENST00000365012 70 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 Y_RNA.460-201ENST00000384255 102 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 MIR15B-201ENST00000385045 98 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 SNORA31.2-201ENST00000516019 134 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.3□□□□□ -2.2
HOXD13P35453 AL022345.2-201ENST00000606307 135 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 BX284668.6-201ENST00000606899 438 ntBASIC1.3□□□□□ -2.2
HOXD13P35453 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
HOXD13P35453 SNORD81.1-201ENST00000363064 77 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 Y_RNA.310-201ENST00000365063 113 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 MIR522-201ENST00000385071 87 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
HOXD13P35453 POLR2KP2-201ENST00000438155 177 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 MTND4P19-201ENST00000446659 478 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 Y_RNA.721-201ENST00000517207 102 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 AC124312.5-201ENST00000604451 268 ntBASIC1.29□□□□□ -2.2
HOXD13P35453 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXD13P35453 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
HOXD13P35453 RNU5E-4P-201ENST00000364931 120 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 RNU6-53P-201ENST00000365367 106 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 SNORD42.2-201ENST00000365570 69 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 Y_RNA.419-201ENST00000384041 102 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 SNORA70.7-201ENST00000384159 133 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 MIR136-201ENST00000385207 82 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 RNU4-30P-201ENST00000410245 143 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 SNRPGP10-201ENST00000432323 225 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 HMGN1P10-201ENST00000474557 553 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 SNORD45.4-201ENST00000516629 73 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 RNU6-988P-201ENST00000519081 107 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 AP003357.1-201ENST00000604497 148 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 AL050343.2-201ENST00000607338 280 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 JPX_2.1-201ENST00000614161 69 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 AL160413.1-201ENST00000622780 310 ntBASIC1.28□□□□□ -2.2
HOXD13P35453 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXD13P35453 RNU6-867P-201ENST00000364956 107 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 Y_RNA.336-201ENST00000365307 109 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 Y_RNA.383-201ENST00000383855 97 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 MIR1298-201ENST00000408783 112 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 RNU6-101P-201ENST00000410323 104 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 AC245047.7-201ENST00000440265 293 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 RPL23AP54-201ENST00000495129 419 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.27□□□□□ -2.21
HOXD13P35453 AL157834.3-201ENST00000615543 103 ntBASIC1.27□□□□□ -2.21
HOXD13P35453 Y_RNA.28-201ENST00000362554 111 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 Y_RNA.509-201ENST00000384506 99 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 MIR526A1-201ENST00000384897 85 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 RNU6-910P-201ENST00000390844 107 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 SNORD12-201ENST00000391002 90 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.26□□□□□ -2.21
HOXD13P35453 AL133373.1-201ENST00000497098 94 ntBASIC1.26□□□□□ -2.21
HOXD13P35453 MIR2681-201ENST00000581814 105 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms