Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A1P12109 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.76□□□□□ -1.97
COL6A1P12109 RNA5SP458-201ENST00000516188 119 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 RNU6-965P-201ENST00000516721 96 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 SNORA31.15-201ENST00000516771 132 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 RNA5SP490-201ENST00000517141 136 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.76□□□□□ -1.97
COL6A1P12109 AL353997.5-201ENST00000618886 171 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 CENPCP1-201ENST00000533085 2578 ntBASIC2.76□□□□□ -1.97
COL6A1P12109 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A1P12109 AC092881.1-201ENST00000638218 2733 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.75□□□□□ -1.97
COL6A1P12109 Y_RNA.127-201ENST00000363386 109 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 SNORA25B-201ENST00000365507 128 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNU6-768P-201ENST00000384683 107 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 SNORA75.5-201ENST00000391291 81 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 Y_RNA.622-201ENST00000411091 108 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNU2-32P-201ENST00000411193 191 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RN7SKP101-201ENST00000411376 320 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 HMGN2P18-201ENST00000450680 270 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNU6-1211P-201ENST00000459179 105 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 AC010531.2-201ENST00000465012 153 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNA5SP281-201ENST00000516504 135 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNU6-63P-201ENST00000516690 95 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 RNU7-193P-201ENST00000516723 65 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 AC007229.1-201ENST00000590455 412 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 AL359881.1-201ENST00000602916 267 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 AC103810.6-201ENST00000606708 136 ntBASIC2.75□□□□□ -1.97
COL6A1P12109 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
COL6A1P12109 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.75□□□□□ -1.97
COL6A1P12109 AC016717.2-201ENST00000609089 5141 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 Y_RNA.81-201ENST00000362997 102 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORD45.3-201ENST00000363836 72 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 RNA5SP205-201ENST00000364653 136 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORD116-14-201ENST00000383894 92 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORD116-17-201ENST00000383929 92 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 RNU6-1080P-201ENST00000383982 107 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORA72-201ENST00000384339 132 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORD116-15-201ENST00000384445 92 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 Y_RNA.542-201ENST00000384641 111 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 SNORD116-19-201ENST00000384729 92 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 Y_RNA.587-201ENST00000391210 103 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 AC023449.1-201ENST00000454464 154 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 RNA5SP82-201ENST00000516707 92 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 AC046143.2-201ENST00000609789 160 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 AC011603.4-201ENST00000611325 277 ntBASIC2.74□□□□□ -1.97
COL6A1P12109 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A1P12109 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A1P12109 ZNF702P-202ENST00000434269 1966 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 Y_RNA.71-201ENST00000362892 104 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 Y_RNA.273-201ENST00000364703 102 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
COL6A1P12109 RNA5SP511-201ENST00000410487 115 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 RNU2-55P-201ENST00000411146 174 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 AL357134.1-201ENST00000445848 426 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.73□□□□□ -1.97
COL6A1P12109 RNU7-197P-201ENST00000458836 62 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 RNU6-1333P-201ENST00000516162 93 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 AP001328.1-201ENST00000528550 176 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 AC015720.1-201ENST00000565251 277 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 MIR4529-201ENST00000578110 78 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 MIR2681-201ENST00000581814 105 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 MIR5092-201ENST00000583139 88 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 AL031274.2-201ENST00000599419 203 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 MIR1248-201ENST00000629190 106 ntBASIC2.73□□□□□ -1.97
COL6A1P12109 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
COL6A1P12109 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
COL6A1P12109 Y_RNA.218-201ENST00000364218 104 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 RNU6-117P-201ENST00000365415 107 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 MIR1278-201ENST00000408753 81 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 AC016909.1-201ENST00000415916 166 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A1P12109 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.72□□□□□ -1.97
COL6A1P12109 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.72□□□□□ -1.97
COL6A1P12109 AC090142.3-201ENST00000519012 385 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A1P12109 MIR378D2-201ENST00000580636 98 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 MIR5694-201ENST00000581190 76 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 AP001340.1-201ENST00000624405 217 ntBASIC2.72□□□□□ -1.97
COL6A1P12109 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.72□□□□□ -1.97
COL6A1P12109 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
COL6A1P12109 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL6A1P12109 Y_RNA.4-201ENST00000362333 112 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 RNU1-23P-201ENST00000363361 144 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 RNA5SP456-201ENST00000364002 114 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 Y_RNA.261-201ENST00000364631 102 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 RNU6-597P-201ENST00000365620 102 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 Y_RNA.432-201ENST00000384087 111 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 RNU6-80P-201ENST00000384195 107 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 MIR1253-201ENST00000408273 105 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 SNORD88.1-201ENST00000408684 91 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 RNU6-588P-201ENST00000410281 105 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A1P12109 SNRPGP8-201ENST00000454064 226 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 AC092991.1-201ENST00000477176 376 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.71□□□□□ -1.98
COL6A1P12109 MIR4438-201ENST00000585271 93 ntBASIC2.71□□□□□ -1.98
COL6A1P12109 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL6A1P12109 RNU1-22P-201ENST00000363334 158 ntBASIC2.7□□□□□ -1.98
COL6A1P12109 RNU6-743P-201ENST00000364151 106 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 142.9 ms