Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RNU1-124P-201ENST00000363861 145 ntBASIC1.1□□□□□ -2.23
VIMP08670 Y_RNA.310-201ENST00000365063 113 ntBASIC1.1□□□□□ -2.23
VIMP08670 RNU4-30P-201ENST00000410245 143 ntBASIC1.1□□□□□ -2.23
VIMP08670 U8.20-201ENST00000459445 131 ntBASIC1.1□□□□□ -2.23
VIMP08670 HMGN1P7-201ENST00000491722 313 ntBASIC1.1□□□□□ -2.23
VIMP08670 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.1□□□□□ -2.23
VIMP08670 SNORD111.1-201ENST00000516421 86 ntBASIC1.1□□□□□ -2.23
VIMP08670 MIR4303-201ENST00000581299 66 ntBASIC1.1□□□□□ -2.23
VIMP08670 LARP7P1-201ENST00000605576 316 ntBASIC1.1□□□□□ -2.23
VIMP08670 AL096861.1-201ENST00000610899 123 ntBASIC1.1□□□□□ -2.23
VIMP08670 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
VIMP08670 RNU6-1084P-201ENST00000362498 107 ntBASIC1.09□□□□□ -2.23
VIMP08670 Y_RNA.368-201ENST00000365547 113 ntBASIC1.09□□□□□ -2.23
VIMP08670 RNU6-1323P-201ENST00000384025 107 ntBASIC1.09□□□□□ -2.23
VIMP08670 Y_RNA.456-201ENST00000384232 111 ntBASIC1.09□□□□□ -2.23
VIMP08670 Y_RNA.471-201ENST00000384312 102 ntBASIC1.09□□□□□ -2.23
VIMP08670 Y_RNA.526-201ENST00000384572 110 ntBASIC1.09□□□□□ -2.23
VIMP08670 Y_RNA.551-201ENST00000384661 102 ntBASIC1.09□□□□□ -2.23
VIMP08670 MIR516B2-201ENST00000385190 85 ntBASIC1.09□□□□□ -2.23
VIMP08670 AL591806.2-201ENST00000433122 173 ntBASIC1.09□□□□□ -2.23
VIMP08670 snoU13.23-201ENST00000458863 104 ntBASIC1.09□□□□□ -2.23
VIMP08670 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.23
VIMP08670 SNORD79.1-201ENST00000516069 84 ntBASIC1.09□□□□□ -2.23
VIMP08670 SNORD45.4-201ENST00000516629 73 ntBASIC1.09□□□□□ -2.23
VIMP08670 AC040926.1-201ENST00000530195 238 ntBASIC1.09□□□□□ -2.23
VIMP08670 MIR3145-201ENST00000580727 82 ntBASIC1.09□□□□□ -2.23
VIMP08670 AL157834.3-201ENST00000615543 103 ntBASIC1.09□□□□□ -2.23
VIMP08670 AL353770.2-201ENST00000620024 78 ntBASIC1.09□□□□□ -2.23
VIMP08670 uc_338.22-201ENST00000622722 187 ntBASIC1.09□□□□□ -2.23
VIMP08670 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.09□□□□□ -2.23
VIMP08670 AL391516.1-201ENST00000554380 2449 ntBASIC1.09□□□□□ -2.24
VIMP08670 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.08□□□□□ -2.24
VIMP08670 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
VIMP08670 RNU1-17P-201ENST00000363022 152 ntBASIC1.08□□□□□ -2.24
VIMP08670 Y_RNA.112-201ENST00000363250 102 ntBASIC1.08□□□□□ -2.24
VIMP08670 RNU4-50P-201ENST00000364361 141 ntBASIC1.08□□□□□ -2.24
VIMP08670 SNORD63-201ENST00000384262 68 ntBASIC1.08□□□□□ -2.24
VIMP08670 AC024067.1-201ENST00000426199 223 ntBASIC1.08□□□□□ -2.24
VIMP08670 SNRPGP10-201ENST00000432323 225 ntBASIC1.08□□□□□ -2.24
VIMP08670 MTATP6P23-201ENST00000440153 476 ntBASIC1.08□□□□□ -2.24
VIMP08670 U8.19-201ENST00000459095 133 ntBASIC1.08□□□□□ -2.24
VIMP08670 AC093852.1-201ENST00000503587 266 ntBASIC1.08□□□□□ -2.24
VIMP08670 RNU6-1170P-201ENST00000515974 106 ntBASIC1.08□□□□□ -2.24
VIMP08670 POLR3GP1-201ENST00000594073 261 ntBASIC1.08□□□□□ -2.24
VIMP08670 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
VIMP08670 RNU6-1187P-201ENST00000364771 110 ntBASIC1.07□□□□□ -2.24
VIMP08670 SNORD14.1-201ENST00000365609 90 ntBASIC1.07□□□□□ -2.24
VIMP08670 RNU6-21P-201ENST00000384710 107 ntBASIC1.07□□□□□ -2.24
VIMP08670 RNU6-131P-201ENST00000391144 107 ntBASIC1.07□□□□□ -2.24
VIMP08670 RNU6-130P-201ENST00000411112 103 ntBASIC1.07□□□□□ -2.24
VIMP08670 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.07□□□□□ -2.24
VIMP08670 AC010655.3-201ENST00000478818 450 ntBASIC1.07□□□□□ -2.24
VIMP08670 Y_RNA.713-201ENST00000517013 96 ntBASIC1.07□□□□□ -2.24
VIMP08670 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
VIMP08670 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.07□□□□□ -2.24
VIMP08670 MIR3192-201ENST00000584920 77 ntBASIC1.07□□□□□ -2.24
VIMP08670 PART1_1.1-201ENST00000611761 217 ntBASIC1.07□□□□□ -2.24
VIMP08670 AL353997.5-201ENST00000618886 171 ntBASIC1.07□□□□□ -2.24
VIMP08670 AC012676.2-201ENST00000619258 186 ntBASIC1.07□□□□□ -2.24
VIMP08670 MIR369-201ENST00000362155 70 ntBASIC1.06□□□□□ -2.24
VIMP08670 SNORD50B-201ENST00000364995 70 ntBASIC1.06□□□□□ -2.24
VIMP08670 snoU2-30.1-201ENST00000365012 70 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC117470.1-201ENST00000381974 330 ntBASIC1.06□□□□□ -2.24
VIMP08670 Y_RNA.419-201ENST00000384041 102 ntBASIC1.06□□□□□ -2.24
VIMP08670 MIR19B1-201ENST00000384829 87 ntBASIC1.06□□□□□ -2.24
VIMP08670 SNORD12-201ENST00000391002 90 ntBASIC1.06□□□□□ -2.24
VIMP08670 MIR1302-11-201ENST00000408051 138 ntBASIC1.06□□□□□ -2.24
VIMP08670 MIR1302-9-201ENST00000408365 138 ntBASIC1.06□□□□□ -2.24
VIMP08670 MIR1302-10-201ENST00000408734 138 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC063976.4-201ENST00000421971 163 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC002429.1-201ENST00000437672 148 ntBASIC1.06□□□□□ -2.24
VIMP08670 snoU13.25-201ENST00000458945 104 ntBASIC1.06□□□□□ -2.24
VIMP08670 RPL39P28-201ENST00000465655 155 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC117454.1-201ENST00000491120 168 ntBASIC1.06□□□□□ -2.24
VIMP08670 RNU6-475P-201ENST00000516073 104 ntBASIC1.06□□□□□ -2.24
VIMP08670 RNU7-116P-201ENST00000516940 62 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC090142.3-201ENST00000519012 385 ntBASIC1.06□□□□□ -2.24
VIMP08670 AC024405.2-202ENST00000532731 184 ntBASIC1.06□□□□□ -2.24
VIMP08670 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.06□□□□□ -2.24
VIMP08670 AP003357.1-201ENST00000604497 148 ntBASIC1.06□□□□□ -2.24
VIMP08670 MIR1302-2-201ENST00000607096 138 ntBASIC1.06□□□□□ -2.24
VIMP08670 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.06□□□□□ -2.24
VIMP08670 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
VIMP08670 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.05□□□□□ -2.24
VIMP08670 Y_RNA.395-201ENST00000383945 109 ntBASIC1.05□□□□□ -2.24
VIMP08670 SNORA80D-201ENST00000384488 135 ntBASIC1.05□□□□□ -2.24
VIMP08670 MIR136-201ENST00000385207 82 ntBASIC1.05□□□□□ -2.24
VIMP08670 HMGN1P10-201ENST00000474557 553 ntBASIC1.05□□□□□ -2.24
VIMP08670 RPS26P48-201ENST00000491713 339 ntBASIC1.05□□□□□ -2.24
VIMP08670 AL391903.3-201ENST00000612158 163 ntBASIC1.05□□□□□ -2.24
VIMP08670 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.05□□□□□ -2.24
VIMP08670 U8.7-201ENST00000364940 136 ntBASIC1.04□□□□□ -2.24
VIMP08670 RNU6-308P-201ENST00000390957 107 ntBASIC1.04□□□□□ -2.24
VIMP08670 AC245047.8-201ENST00000456455 284 ntBASIC1.04□□□□□ -2.24
VIMP08670 RPL23AP54-201ENST00000495129 419 ntBASIC1.04□□□□□ -2.24
VIMP08670 Y_RNA.714-201ENST00000517065 90 ntBASIC1.04□□□□□ -2.24
VIMP08670 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.04□□□□□ -2.24
VIMP08670 AP001094.1-201ENST00000579805 193 ntBASIC1.04□□□□□ -2.24
VIMP08670 PRELID3BP2-201ENST00000605362 201 ntBASIC1.04□□□□□ -2.24
VIMP08670 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms