Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-976P-201ENST00000516086 111 ntBASIC1.04□□□□□ -2.24
SDC3O75056 RNU6-966P-201ENST00000516479 104 ntBASIC1.04□□□□□ -2.24
SDC3O75056 SNORA40.14-201ENST00000516543 86 ntBASIC1.04□□□□□ -2.24
SDC3O75056 SNORA70.22-201ENST00000517160 124 ntBASIC1.04□□□□□ -2.24
SDC3O75056 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.04□□□□□ -2.24
SDC3O75056 AC093027.1-201ENST00000546698 429 ntBASIC1.04□□□□□ -2.24
SDC3O75056 MIR4762-201ENST00000585261 75 ntBASIC1.04□□□□□ -2.24
SDC3O75056 AL117336.2-201ENST00000602435 335 ntBASIC1.04□□□□□ -2.24
SDC3O75056 SNORD114-21-201ENST00000606412 72 ntBASIC1.04□□□□□ -2.24
SDC3O75056 AC004832.4-201ENST00000608952 331 ntBASIC1.04□□□□□ -2.24
SDC3O75056 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC3O75056 Y_RNA.5-201ENST00000362334 102 ntBASIC1.03□□□□□ -2.24
SDC3O75056 Y_RNA.39-201ENST00000362620 98 ntBASIC1.03□□□□□ -2.24
SDC3O75056 U8.5-201ENST00000364528 136 ntBASIC1.03□□□□□ -2.24
SDC3O75056 SNORA22-201ENST00000383907 134 ntBASIC1.03□□□□□ -2.24
SDC3O75056 SNORA70.7-201ENST00000384159 133 ntBASIC1.03□□□□□ -2.24
SDC3O75056 SNORD116-13-201ENST00000384408 92 ntBASIC1.03□□□□□ -2.24
SDC3O75056 SNORA22C-201ENST00000384614 134 ntBASIC1.03□□□□□ -2.24
SDC3O75056 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
SDC3O75056 AL390729.2-201ENST00000416137 156 ntBASIC1.03□□□□□ -2.24
SDC3O75056 MCFD2P1-201ENST00000417812 300 ntBASIC1.03□□□□□ -2.24
SDC3O75056 AL591704.2-201ENST00000421658 181 ntBASIC1.03□□□□□ -2.24
SDC3O75056 CYCTP-201ENST00000504253 315 ntBASIC1.03□□□□□ -2.24
SDC3O75056 RNU6-947P-201ENST00000516264 106 ntBASIC1.03□□□□□ -2.24
SDC3O75056 RNU4-77P-201ENST00000516692 156 ntBASIC1.03□□□□□ -2.24
SDC3O75056 MIR5188-201ENST00000583467 113 ntBASIC1.03□□□□□ -2.24
SDC3O75056 AC092447.9-201ENST00000603395 144 ntBASIC1.03□□□□□ -2.24
SDC3O75056 AL357312.1-201ENST00000603879 298 ntBASIC1.03□□□□□ -2.24
SDC3O75056 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.03□□□□□ -2.24
SDC3O75056 AL606534.2-204ENST00000635008 178 ntBASIC1.03□□□□□ -2.24
SDC3O75056 AC112487.2-201ENST00000637950 304 ntBASIC1.03□□□□□ -2.24
SDC3O75056 RNU6-324P-201ENST00000363957 106 ntBASIC1.02□□□□□ -2.25
SDC3O75056 RNU6-1175P-201ENST00000365200 107 ntBASIC1.02□□□□□ -2.25
SDC3O75056 RNU6-1105P-201ENST00000384774 107 ntBASIC1.02□□□□□ -2.25
SDC3O75056 RPEP5-201ENST00000441137 268 ntBASIC1.02□□□□□ -2.25
SDC3O75056 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
SDC3O75056 AC005042.3-201ENST00000453230 174 ntBASIC1.02□□□□□ -2.25
SDC3O75056 U8.19-201ENST00000459095 133 ntBASIC1.02□□□□□ -2.25
SDC3O75056 MTND3P22-201ENST00000510932 243 ntBASIC1.02□□□□□ -2.25
SDC3O75056 SNORD116-28-201ENST00000516123 91 ntBASIC1.02□□□□□ -2.25
SDC3O75056 RNU6-1223P-201ENST00000517124 104 ntBASIC1.02□□□□□ -2.25
SDC3O75056 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC3O75056 AC120024.3-201ENST00000603167 156 ntBASIC1.02□□□□□ -2.25
SDC3O75056 LARP7P1-201ENST00000605576 316 ntBASIC1.02□□□□□ -2.25
SDC3O75056 AL121655.1-201ENST00000605811 308 ntBASIC1.02□□□□□ -2.25
SDC3O75056 AC104985.2-201ENST00000620598 500 ntBASIC1.02□□□□□ -2.25
SDC3O75056 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC3O75056 AC027335.2-201ENST00000624030 375 ntBASIC1.02□□□□□ -2.25
SDC3O75056 Y_RNA.172-201ENST00000363765 102 ntBASIC1.01□□□□□ -2.25
SDC3O75056 MT-TD-201ENST00000387419 68 ntBASIC1.01□□□□□ -2.25
SDC3O75056 MIR891A-201ENST00000401237 79 ntBASIC1.01□□□□□ -2.25
SDC3O75056 RNU6-710P-201ENST00000410424 105 ntBASIC1.01□□□□□ -2.25
SDC3O75056 SNORA31.2-201ENST00000516019 134 ntBASIC1.01□□□□□ -2.25
SDC3O75056 AC005972.2-201ENST00000604690 348 ntBASIC1.01□□□□□ -2.25
SDC3O75056 Y_RNA.772-201ENST00000606692 102 ntBASIC1.01□□□□□ -2.25
SDC3O75056 AL591926.4-201ENST00000616895 298 ntBASIC1.01□□□□□ -2.25
SDC3O75056 RNU1-124P-201ENST00000363861 145 ntBASIC1□□□□□ -2.25
SDC3O75056 Y_RNA.458-201ENST00000384240 102 ntBASIC1□□□□□ -2.25
SDC3O75056 RNU6-910P-201ENST00000390844 107 ntBASIC1□□□□□ -2.25
SDC3O75056 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1□□□□□ -2.25
SDC3O75056 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1□□□□□ -2.25
SDC3O75056 AL160004.2-201ENST00000432935 350 ntBASIC1□□□□□ -2.25
SDC3O75056 RPS20P10-201ENST00000451209 253 ntBASIC1□□□□□ -2.25
SDC3O75056 SNORA31.4-201ENST00000516049 129 ntBASIC1□□□□□ -2.25
SDC3O75056 RNU6-475P-201ENST00000516073 104 ntBASIC1□□□□□ -2.25
SDC3O75056 RNU6-1116P-201ENST00000517269 99 ntBASIC1□□□□□ -2.25
SDC3O75056 SNORD58B-201ENST00000607313 66 ntBASIC1□□□□□ -2.25
SDC3O75056 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SDC3O75056 RNU4-79P-201ENST00000362764 141 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.58-201ENST00000362807 102 ntBASIC0.99□□□□□ -2.25
SDC3O75056 RNU4-73P-201ENST00000363164 141 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.154-201ENST00000363624 102 ntBASIC0.99□□□□□ -2.25
SDC3O75056 RNY3P1-201ENST00000365085 102 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.315-201ENST00000365117 102 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.329-201ENST00000365209 107 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.354-201ENST00000365448 111 ntBASIC0.99□□□□□ -2.25
SDC3O75056 RNY3-201ENST00000365484 102 ntBASIC0.99□□□□□ -2.25
SDC3O75056 SNORA72-201ENST00000384339 132 ntBASIC0.99□□□□□ -2.25
SDC3O75056 RNU6-163P-201ENST00000384396 106 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.526-201ENST00000384572 110 ntBASIC0.99□□□□□ -2.25
SDC3O75056 MIR526A1-201ENST00000384897 85 ntBASIC0.99□□□□□ -2.25
SDC3O75056 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.99□□□□□ -2.25
SDC3O75056 AC245047.7-201ENST00000440265 293 ntBASIC0.99□□□□□ -2.25
SDC3O75056 SNORA25.10-201ENST00000515926 124 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.661-201ENST00000516003 99 ntBASIC0.99□□□□□ -2.25
SDC3O75056 Y_RNA.713-201ENST00000517013 96 ntBASIC0.99□□□□□ -2.25
SDC3O75056 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.99□□□□□ -2.25
SDC3O75056 RPS29P30-201ENST00000600975 111 ntBASIC0.99□□□□□ -2.25
SDC3O75056 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SDC3O75056 SNORD68-201ENST00000363214 84 ntBASIC0.98□□□□□ -2.25
SDC3O75056 Y_RNA.112-201ENST00000363250 102 ntBASIC0.98□□□□□ -2.25
SDC3O75056 Y_RNA.197-201ENST00000364004 102 ntBASIC0.98□□□□□ -2.25
SDC3O75056 RNU4-38P-201ENST00000364472 129 ntBASIC0.98□□□□□ -2.25
SDC3O75056 RNU6-1323P-201ENST00000384025 107 ntBASIC0.98□□□□□ -2.25
SDC3O75056 SNORD63-201ENST00000384262 68 ntBASIC0.98□□□□□ -2.25
SDC3O75056 Y_RNA.621-201ENST00000411065 96 ntBASIC0.98□□□□□ -2.25
SDC3O75056 AC104332.1-201ENST00000440471 797 ntBASIC0.98□□□□□ -2.25
SDC3O75056 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.98□□□□□ -2.25
SDC3O75056 AC048334.1-201ENST00000477975 159 ntBASIC0.98□□□□□ -2.25
SDC3O75056 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms