Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.68□□□□□ -2.3
CLDN3O15551 SNORD45.4-201ENST00000516629 73 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 RNU7-30P-201ENST00000516835 62 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 RNU6-264P-201ENST00000517134 104 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 AC022616.4-201ENST00000522985 181 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 AP003716.2-201ENST00000528260 108 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 AC060780.3-201ENST00000589464 80 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 AC022709.1-201ENST00000615967 87 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 AC087588.2-201ENST00000617667 426 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 7SK.10-201ENST00000621414 298 ntBASIC0.68□□□□□ -2.3
CLDN3O15551 snoU2-30.1-201ENST00000365012 70 ntBASIC0.67□□□□□ -2.3
CLDN3O15551 Y_RNA.508-201ENST00000384502 114 ntBASIC0.67□□□□□ -2.3
CLDN3O15551 MIR1185-1-201ENST00000408598 86 ntBASIC0.67□□□□□ -2.3
CLDN3O15551 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.67□□□□□ -2.3
CLDN3O15551 MIR4764-201ENST00000580680 88 ntBASIC0.67□□□□□ -2.3
CLDN3O15551 Y_RNA.101-201ENST00000363154 102 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNA5SP48-201ENST00000363969 126 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 Y_RNA.354-201ENST00000365448 111 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC117470.1-201ENST00000381974 330 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU6-110P-201ENST00000384508 104 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 Y_RNA.577-201ENST00000384794 101 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 MIR522-201ENST00000385071 87 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU6-131P-201ENST00000391144 107 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 Y_RNA.592-201ENST00000410274 109 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU2-54P-201ENST00000410299 190 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU6-1156P-201ENST00000410365 100 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC067940.1-201ENST00000458411 300 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 U7.7-201ENST00000459276 60 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC113410.1-201ENST00000505029 247 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 SNORA25.10-201ENST00000515926 124 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU6-155P-201ENST00000516347 100 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 RNU7-43P-201ENST00000516554 64 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC025627.3-201ENST00000582078 182 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC005176.2-201ENST00000596933 147 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 AC240442.1-201ENST00000616055 283 ntBASIC0.66□□□□□ -2.3
CLDN3O15551 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.66□□□□□ -2.3
CLDN3O15551 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.65□□□□□ -2.3
CLDN3O15551 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
CLDN3O15551 Y_RNA.172-201ENST00000363765 102 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 Y_RNA.796-201ENST00000364268 102 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 Y_RNA.799-201ENST00000364992 102 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 RNU6-767P-201ENST00000384132 107 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CLDN3O15551 SNORD99-201ENST00000408612 74 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 RNU6-994P-201ENST00000410507 111 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 CHEK2P4-201ENST00000450340 246 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 COX6CP6-201ENST00000490840 228 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 RNU6-120P-201ENST00000516077 103 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 AC084782.3-201ENST00000612282 578 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.65□□□□□ -2.31
CLDN3O15551 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 RNU4-14P-201ENST00000410858 122 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 RNU2-61P-201ENST00000411069 191 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 HMGN2P32-201ENST00000444648 269 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 RNU7-169P-201ENST00000459456 61 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 snoU13.18-201ENST00000459483 104 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 PRDX4P1-201ENST00000507189 574 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 Y_RNA.655-201ENST00000515919 96 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 Y_RNA.714-201ENST00000517065 90 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 AP003484.1-201ENST00000530974 250 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 AC093027.1-201ENST00000546698 429 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 AC005972.2-201ENST00000604690 348 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 RNU6-94P-201ENST00000607728 107 ntBASIC0.64□□□□□ -2.31
CLDN3O15551 RNU1-133P-201ENST00000364867 167 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 RNU6-20P-201ENST00000384106 107 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 RNU6-1199P-201ENST00000411249 104 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.63□□□□□ -2.31
CLDN3O15551 SNORD123-201ENST00000459473 70 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 RN7SKP164-201ENST00000516138 266 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 MTND4LP26-201ENST00000518144 282 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 AC144568.1-201ENST00000520139 137 ntBASIC0.63□□□□□ -2.31
CLDN3O15551 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
CLDN3O15551 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.63□□□□□ -2.31
CLDN3O15551 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
CLDN3O15551 RNU6-845P-201ENST00000362578 103 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 RNU6-626P-201ENST00000363354 107 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 SNORD50B-201ENST00000364995 70 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 SNORD78.2-201ENST00000391076 69 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 SNORA75.6-201ENST00000391318 127 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 Y_RNA.605-201ENST00000410577 105 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 FCF1P9-201ENST00000412546 282 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 SNRPGP10-201ENST00000432323 225 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.62□□□□□ -2.31
CLDN3O15551 RPL30P15-201ENST00000457129 321 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 Y_RNA.635-201ENST00000459041 101 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 U8.19-201ENST00000459095 133 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 MTND4P17-201ENST00000470444 350 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 Y_RNA.691-201ENST00000516611 103 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 RNU7-4P-201ENST00000516961 62 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 AC004817.2-201ENST00000561794 651 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 AL136317.1-201ENST00000612653 226 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 AC098679.4-201ENST00000624241 654 ntBASIC0.62□□□□□ -2.31
CLDN3O15551 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
CLDN3O15551 Y_RNA.446-201ENST00000384178 104 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 SNORA72-201ENST00000384339 132 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 RNY3P4-201ENST00000384428 101 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 Y_RNA.646-201ENST00000410980 101 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 RNU6-370P-201ENST00000411008 104 ntBASIC0.61□□□□□ -2.31
CLDN3O15551 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms