Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 RNU5E-4P-201ENST00000364931 120 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 AC022028.1-201ENST00000412054 408 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.54□□□□□ -2.16
NPHP1O15259 AC087343.1-201ENST00000477341 475 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 SNORA40.14-201ENST00000516543 86 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 RNU6-1116P-201ENST00000517269 99 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 MIR4295-201ENST00000585286 85 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 SNORD58B-201ENST00000607313 66 ntBASIC1.54□□□□□ -2.16
NPHP1O15259 AL451046.2-201ENST00000403074 277 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 MCFD2P1-201ENST00000417812 300 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 AL160004.2-201ENST00000432935 350 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 AC005042.3-201ENST00000453230 174 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 CYCTP-201ENST00000504253 315 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 RNU6-322P-201ENST00000516010 103 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.53□□□□□ -2.16
NPHP1O15259 AL080274.1-201ENST00000605565 220 ntBASIC1.53□□□□□ -2.16
NPHP1O15259 RNU6-833P-201ENST00000363486 107 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 RNU1-93P-201ENST00000364704 169 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 Y_RNA.329-201ENST00000365209 107 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 Y_RNA.458-201ENST00000384240 102 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 RNA5SP480-201ENST00000516840 109 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 AC120024.3-201ENST00000603167 156 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 AL591926.4-201ENST00000616895 298 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.52□□□□□ -2.17
NPHP1O15259 AC027279.3-201ENST00000625055 122 ntBASIC1.52□□□□□ -2.17
NPHP1O15259 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
NPHP1O15259 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
NPHP1O15259 SNORD68-201ENST00000363214 84 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.112-201ENST00000363250 102 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 SNORA25.8-201ENST00000364831 128 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.395-201ENST00000383945 109 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.419-201ENST00000384041 102 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.462-201ENST00000384268 102 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 MIR618-201ENST00000385287 98 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 MIR891A-201ENST00000401237 79 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.621-201ENST00000411065 96 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 AC104332.1-201ENST00000440471 797 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 SNORA25.10-201ENST00000515926 124 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 AC022616.4-201ENST00000522985 181 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 AC005972.2-201ENST00000604690 348 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 AL121655.1-201ENST00000605811 308 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 Y_RNA.772-201ENST00000606692 102 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 AL050343.2-201ENST00000607338 280 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 uc_338.22-201ENST00000622722 187 ntBASIC1.51□□□□□ -2.17
NPHP1O15259 U8.5-201ENST00000364528 136 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 SNORD42.2-201ENST00000365570 69 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 Y_RNA.431-201ENST00000384086 102 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 RNU6-1105P-201ENST00000384774 107 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 MIR526A1-201ENST00000384897 85 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 MIR758-201ENST00000390227 88 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 AL390729.2-201ENST00000416137 156 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.5□□□□□ -2.17
NPHP1O15259 RPS20P10-201ENST00000451209 253 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 RNU6-1170P-201ENST00000515974 106 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 MIR4762-201ENST00000585261 75 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 RPS29P30-201ENST00000600975 111 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 AL022345.2-201ENST00000606307 135 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 AC027335.2-201ENST00000624030 375 ntBASIC1.5□□□□□ -2.17
NPHP1O15259 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
NPHP1O15259 Y_RNA.80-201ENST00000362996 102 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 SNORA25-201ENST00000384384 134 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 Y_RNA.485-201ENST00000384395 102 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 RNU6-163P-201ENST00000384396 106 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 MIR150-201ENST00000385048 84 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 RNU6-710P-201ENST00000410424 105 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 RNU6-1054P-201ENST00000411293 104 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 MTND1P14-201ENST00000427400 950 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.49□□□□□ -2.17
NPHP1O15259 SNORA31.2-201ENST00000516019 134 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 RNU6-1223P-201ENST00000517124 104 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 MIR151B-201ENST00000584249 96 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 AL357312.1-201ENST00000603879 298 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 AC022709.1-201ENST00000615967 87 ntBASIC1.49□□□□□ -2.17
NPHP1O15259 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.48□□□□□ -2.17
NPHP1O15259 Y_RNA.253-201ENST00000364562 112 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 Y_RNA.604-201ENST00000410574 102 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 PIGPP3-201ENST00000425307 415 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 Y_RNA.639-201ENST00000458981 102 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 AC048334.1-201ENST00000477975 159 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.48□□□□□ -2.17
NPHP1O15259 BX284668.6-201ENST00000606899 438 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 AC006157.1-201ENST00000611750 366 ntBASIC1.48□□□□□ -2.17
NPHP1O15259 MIR369-201ENST00000362155 70 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 SNORD81.1-201ENST00000363064 77 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 Y_RNA.331-201ENST00000365267 102 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 RPS23P4-201ENST00000487908 423 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 AC114811.1-201ENST00000507207 168 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 RNA5SP404-201ENST00000517118 132 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 AC007485.1-201ENST00000616755 206 ntBASIC1.47□□□□□ -2.17
NPHP1O15259 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.47□□□□□ -2.17
NPHP1O15259 Y_RNA.61-201ENST00000362835 102 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 SNORA72-201ENST00000384339 132 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
NPHP1O15259 RNU6-855P-201ENST00000410395 104 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.46□□□□□ -2.18
NPHP1O15259 AC245047.7-201ENST00000440265 293 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 SNORA31.4-201ENST00000516049 129 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 RNU6-475P-201ENST00000516073 104 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 AC068338.1-201ENST00000565567 176 ntBASIC1.46□□□□□ -2.18
NPHP1O15259 MIR6788-201ENST00000618842 66 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms