Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.3□□□□□ -2.36
LSM1O15116 SNRPGP10-201ENST00000432323 225 ntBASIC0.3□□□□□ -2.36
LSM1O15116 AC002350.1-201ENST00000490759 375 ntBASIC0.3□□□□□ -2.36
LSM1O15116 AC108740.1-201ENST00000498629 225 ntBASIC0.3□□□□□ -2.36
LSM1O15116 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
LSM1O15116 RNU6-314P-201ENST00000516574 104 ntBASIC0.3□□□□□ -2.36
LSM1O15116 RNU6-1012P-201ENST00000516606 109 ntBASIC0.3□□□□□ -2.36
LSM1O15116 MIR4711-201ENST00000578274 70 ntBASIC0.3□□□□□ -2.36
LSM1O15116 MIR548AR-201ENST00000582191 57 ntBASIC0.3□□□□□ -2.36
LSM1O15116 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.3□□□□□ -2.36
LSM1O15116 AC240442.1-201ENST00000616055 283 ntBASIC0.3□□□□□ -2.36
LSM1O15116 MIR6734-201ENST00000621166 68 ntBASIC0.3□□□□□ -2.36
LSM1O15116 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.3□□□□□ -2.36
LSM1O15116 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.3□□□□□ -2.36
LSM1O15116 Y_RNA.101-201ENST00000363154 102 ntBASIC0.29□□□□□ -2.36
LSM1O15116 RNU6-580P-201ENST00000365159 107 ntBASIC0.29□□□□□ -2.36
LSM1O15116 SNORA2B-201ENST00000384583 137 ntBASIC0.29□□□□□ -2.36
LSM1O15116 Y_RNA.559-201ENST00000384686 107 ntBASIC0.29□□□□□ -2.36
LSM1O15116 MIR518E-201ENST00000385252 88 ntBASIC0.29□□□□□ -2.36
LSM1O15116 MIR936-201ENST00000401264 98 ntBASIC0.29□□□□□ -2.36
LSM1O15116 RNU6-1050P-201ENST00000410388 107 ntBASIC0.29□□□□□ -2.36
LSM1O15116 AL353997.1-201ENST00000432936 108 ntBASIC0.29□□□□□ -2.36
LSM1O15116 U8.19-201ENST00000459095 133 ntBASIC0.29□□□□□ -2.36
LSM1O15116 MIR2355-201ENST00000517199 87 ntBASIC0.29□□□□□ -2.36
LSM1O15116 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.29□□□□□ -2.36
LSM1O15116 RMST_2.1-201ENST00000617263 136 ntBASIC0.29□□□□□ -2.36
LSM1O15116 AC091925.1-201ENST00000623204 462 ntBASIC0.29□□□□□ -2.36
LSM1O15116 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.29□□□□□ -2.36
LSM1O15116 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
LSM1O15116 RNU6-1084P-201ENST00000362498 107 ntBASIC0.28□□□□□ -2.36
LSM1O15116 Y_RNA.368-201ENST00000365547 113 ntBASIC0.28□□□□□ -2.36
LSM1O15116 Y_RNA.370-201ENST00000365589 108 ntBASIC0.28□□□□□ -2.36
LSM1O15116 VTRNA1-3-201ENST00000365645 89 ntBASIC0.28□□□□□ -2.36
LSM1O15116 RNY1P14-201ENST00000384426 108 ntBASIC0.28□□□□□ -2.36
LSM1O15116 MIR216A-201ENST00000385063 110 ntBASIC0.28□□□□□ -2.36
LSM1O15116 MIR548K-201ENST00000408406 116 ntBASIC0.28□□□□□ -2.36
LSM1O15116 RNU2-54P-201ENST00000410299 190 ntBASIC0.28□□□□□ -2.36
LSM1O15116 RNU6-1199P-201ENST00000411249 104 ntBASIC0.28□□□□□ -2.36
LSM1O15116 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.28□□□□□ -2.36
LSM1O15116 RNU6-408P-201ENST00000515910 100 ntBASIC0.28□□□□□ -2.36
LSM1O15116 RNU4-49P-201ENST00000516080 140 ntBASIC0.28□□□□□ -2.36
LSM1O15116 MIR2115-201ENST00000516657 100 ntBASIC0.28□□□□□ -2.36
LSM1O15116 AL355073.2-201ENST00000612106 557 ntBASIC0.28□□□□□ -2.36
LSM1O15116 AL589743.1-201ENST00000551932 2712 ntBASIC0.28□□□□□ -2.37
LSM1O15116 MIR377-201ENST00000362145 69 ntBASIC0.27□□□□□ -2.37
LSM1O15116 SNORA72-201ENST00000384339 132 ntBASIC0.27□□□□□ -2.37
LSM1O15116 MLLT10P1-201ENST00000418346 262 ntBASIC0.27□□□□□ -2.37
LSM1O15116 SNRPGP14-201ENST00000435400 219 ntBASIC0.27□□□□□ -2.37
LSM1O15116 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.27□□□□□ -2.37
LSM1O15116 RNU6-830P-201ENST00000516353 107 ntBASIC0.27□□□□□ -2.37
LSM1O15116 Y_RNA.682-201ENST00000516457 100 ntBASIC0.27□□□□□ -2.37
LSM1O15116 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.27□□□□□ -2.37
LSM1O15116 AC093027.1-201ENST00000546698 429 ntBASIC0.27□□□□□ -2.37
LSM1O15116 AC024909.2-201ENST00000553035 286 ntBASIC0.27□□□□□ -2.37
LSM1O15116 SNORA4-201ENST00000584302 138 ntBASIC0.27□□□□□ -2.37
LSM1O15116 AC005972.2-201ENST00000604690 348 ntBASIC0.27□□□□□ -2.37
LSM1O15116 RBM11P1-201ENST00000604951 799 ntBASIC0.27□□□□□ -2.37
LSM1O15116 Y_RNA.2-201ENST00000362330 96 ntBASIC0.26□□□□□ -2.37
LSM1O15116 Y_RNA.9-201ENST00000362354 101 ntBASIC0.26□□□□□ -2.37
LSM1O15116 Y_RNA.194-201ENST00000363985 102 ntBASIC0.26□□□□□ -2.37
LSM1O15116 Y_RNA.354-201ENST00000365448 111 ntBASIC0.26□□□□□ -2.37
LSM1O15116 RNU6-131P-201ENST00000391144 107 ntBASIC0.26□□□□□ -2.37
LSM1O15116 MTCO2P27-201ENST00000420740 428 ntBASIC0.26□□□□□ -2.37
LSM1O15116 AC005534.2-201ENST00000431047 433 ntBASIC0.26□□□□□ -2.37
LSM1O15116 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.26□□□□□ -2.37
LSM1O15116 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.26□□□□□ -2.37
LSM1O15116 MTCO3P10-201ENST00000455912 772 ntBASIC0.26□□□□□ -2.37
LSM1O15116 MIR4300-201ENST00000581016 96 ntBASIC0.26□□□□□ -2.37
LSM1O15116 AC022709.1-201ENST00000615967 87 ntBASIC0.26□□□□□ -2.37
LSM1O15116 MIR18A-201ENST00000362310 71 ntBASIC0.25□□□□□ -2.37
LSM1O15116 Y_RNA.450-201ENST00000384198 113 ntBASIC0.25□□□□□ -2.37
LSM1O15116 Y_RNA.554-201ENST00000384672 102 ntBASIC0.25□□□□□ -2.37
LSM1O15116 MT-TN-201ENST00000387400 73 ntBASIC0.25□□□□□ -2.37
LSM1O15116 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.25□□□□□ -2.37
LSM1O15116 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.25□□□□□ -2.37
LSM1O15116 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
LSM1O15116 AC103591.3-201ENST00000608684 209 ntBASIC0.25□□□□□ -2.37
LSM1O15116 AC015726.2-201ENST00000620112 122 ntBASIC0.25□□□□□ -2.37
LSM1O15116 Y_RNA.148-201ENST00000363557 117 ntBASIC0.24□□□□□ -2.37
LSM1O15116 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
LSM1O15116 Y_RNA.339-201ENST00000365325 102 ntBASIC0.24□□□□□ -2.37
LSM1O15116 RNU4-45P-201ENST00000365469 141 ntBASIC0.24□□□□□ -2.37
LSM1O15116 Y_RNA.404-201ENST00000383978 102 ntBASIC0.24□□□□□ -2.37
LSM1O15116 Y_RNA.517-201ENST00000384551 106 ntBASIC0.24□□□□□ -2.37
LSM1O15116 CHEK2P4-201ENST00000450340 246 ntBASIC0.24□□□□□ -2.37
LSM1O15116 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.24□□□□□ -2.37
LSM1O15116 RNU6-436P-201ENST00000516171 114 ntBASIC0.24□□□□□ -2.37
LSM1O15116 RNU6-966P-201ENST00000516479 104 ntBASIC0.24□□□□□ -2.37
LSM1O15116 Y_RNA.708-201ENST00000516950 96 ntBASIC0.24□□□□□ -2.37
LSM1O15116 AC245505.1-201ENST00000556398 224 ntBASIC0.24□□□□□ -2.37
LSM1O15116 AC015540.1-201ENST00000615828 501 ntBASIC0.24□□□□□ -2.37
LSM1O15116 SNORD45.3-201ENST00000363836 72 ntBASIC0.23□□□□□ -2.37
LSM1O15116 RNA5SP193-201ENST00000410353 107 ntBASIC0.23□□□□□ -2.37
LSM1O15116 RNU6-1132P-201ENST00000459214 107 ntBASIC0.23□□□□□ -2.37
LSM1O15116 RPL17P19-201ENST00000489069 552 ntBASIC0.23□□□□□ -2.37
LSM1O15116 AC006380.1-201ENST00000603598 186 ntBASIC0.23□□□□□ -2.37
LSM1O15116 AC092794.2-201ENST00000620933 563 ntBASIC0.23□□□□□ -2.37
LSM1O15116 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
LSM1O15116 RNU6-396P-201ENST00000365369 105 ntBASIC0.22□□□□□ -2.37
LSM1O15116 MTND4P28-201ENST00000426217 387 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms