Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RNU6-784P-201ENST00000384330 106 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 MIR635-201ENST00000384830 98 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 SNORD93-201ENST00000408813 74 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 RNU7-181P-201ENST00000517234 74 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 BNIP3P40-201ENST00000596017 556 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 AC093726.3-201ENST00000637588 150 ntBASIC-1.22□□□□□ -2.6
HMGN4O00479 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-1.22□□□□□ -2.6
HMGN4O00479 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-1.23□□□□□ -2.61
HMGN4O00479 RNU6-324P-201ENST00000363957 106 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 RNU6-726P-201ENST00000364680 107 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 SNORD114-15-201ENST00000364687 72 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 Y_RNA.274-201ENST00000364714 101 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 Y_RNA.319-201ENST00000365138 92 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 SNORD116.1-201ENST00000365628 92 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 RNU6-533P-201ENST00000384144 107 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 Y_RNA.555-201ENST00000384673 110 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 RNU6-757P-201ENST00000410334 100 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 RPS27AP14-201ENST00000422868 454 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-1.23□□□□□ -2.61
HMGN4O00479 RPL7P42-201ENST00000481005 679 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 RNA5SP169-201ENST00000517268 117 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 AC105081.1-201ENST00000617727 106 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 AL158209.2-201ENST00000619266 216 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 AC005609.4-201ENST00000625071 447 ntBASIC-1.23□□□□□ -2.61
HMGN4O00479 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 SNORD14E-201ENST00000364009 85 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 RNU6-280P-201ENST00000364145 104 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 RNU6-1317P-201ENST00000364582 104 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.24□□□□□ -2.61
HMGN4O00479 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.24□□□□□ -2.61
HMGN4O00479 RNU7-167P-201ENST00000459160 62 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 RNU7-138P-201ENST00000459479 64 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 AC021146.6-201ENST00000514659 117 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 RNU6-751P-201ENST00000516382 101 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.24□□□□□ -2.61
HMGN4O00479 MIR548AX-201ENST00000580117 73 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 MIR6082-201ENST00000613604 109 ntBASIC-1.24□□□□□ -2.61
HMGN4O00479 SNORD115-32-201ENST00000364079 82 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 RNU6-169P-201ENST00000365336 107 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 SNORA20.2-201ENST00000383922 131 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 SNORD116-12-201ENST00000384468 92 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 RNU6-291P-201ENST00000384720 107 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 Y_RNA.608-201ENST00000410647 95 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.25□□□□□ -2.61
HMGN4O00479 AC105417.1-201ENST00000514691 285 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 SNORA27.4-201ENST00000516650 95 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 RNU6-765P-201ENST00000516916 99 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 AC090572.1-201ENST00000519251 160 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 AP003168.1-201ENST00000530091 307 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.25□□□□□ -2.61
HMGN4O00479 uc_338.11-201ENST00000619132 160 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 SEPT14P19-203ENST00000633205 211 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 AC073869.9-201ENST00000641610 120 ntBASIC-1.25□□□□□ -2.61
HMGN4O00479 RNU6-1029P-201ENST00000384109 107 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-1.26□□□□□ -2.61
HMGN4O00479 AC236972.2-201ENST00000434979 310 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.26□□□□□ -2.61
HMGN4O00479 SNORA25.10-201ENST00000515926 124 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 SCOCP1-201ENST00000554676 349 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 AC080013.3-201ENST00000606839 578 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 AL136370.1-201ENST00000608166 691 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 AC104010.1-201ENST00000616889 150 ntBASIC-1.26□□□□□ -2.61
HMGN4O00479 SNORD114-7-201ENST00000362520 77 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 Y_RNA.302-201ENST00000364997 102 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 RNU6-159P-201ENST00000391080 106 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 MTND3P1-201ENST00000441336 220 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 RNU2-11P-201ENST00000459191 187 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 AC016550.1-201ENST00000505348 785 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 HSPE1P23-201ENST00000509838 286 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 POLR3GP1-201ENST00000594073 261 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 AC005828.6-201ENST00000606610 232 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 AC006441.5-201ENST00000612680 209 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 AC022960.3-201ENST00000619794 441 ntBASIC-1.27□□□□□ -2.61
HMGN4O00479 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-1.27□□□□□ -2.61
HMGN4O00479 Y_RNA.68-201ENST00000362881 102 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 SNORA24-201ENST00000384096 131 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 RNU6-535P-201ENST00000384722 107 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 SNRPGP14-201ENST00000435400 219 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 RNU6-881P-201ENST00000516813 102 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 SCARNA1-201ENST00000517138 166 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 AC022616.4-201ENST00000522985 181 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 MIR4703-201ENST00000577728 79 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 MIR4324-201ENST00000584846 72 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 AC064836.2-201ENST00000609491 462 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 MIR6738-201ENST00000619620 64 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 AP002371.2-201ENST00000624450 503 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.28□□□□□ -2.61
HMGN4O00479 U6.115-201ENST00000636045 103 ntBASIC-1.28□□□□□ -2.61
HMGN4O00479 RNY3P5-201ENST00000384127 102 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 RNU6-35P-201ENST00000384530 107 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 MIR153-2-201ENST00000385225 87 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 UQCRBP2-201ENST00000447827 297 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 U8.19-201ENST00000459095 133 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 U8.22-201ENST00000459141 133 ntBASIC-1.29□□□□□ -2.62
HMGN4O00479 GMFBP1-201ENST00000467831 427 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms