Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AP002004.2-201ENST00000531656 154 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 AC040896.1-201ENST00000613819 479 ntBASIC1.43□□□□□ -2.18
CPSF3Q9UKF6 SNORD81.1-201ENST00000363064 77 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 RNU4-50P-201ENST00000364361 141 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.265-201ENST00000364677 108 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 RNU6-937P-201ENST00000384325 106 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.526-201ENST00000384572 110 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 MIR562-201ENST00000384894 95 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 MIR758-201ENST00000390227 88 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 CALM2P4-201ENST00000430810 426 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 RPS4XP11-201ENST00000446897 772 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 AC005042.3-201ENST00000453230 174 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 U8.20-201ENST00000459445 131 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 AC068338.1-201ENST00000565567 176 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 MIR3937-201ENST00000580135 106 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 SNORA28-201ENST00000606769 126 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 AC004832.4-201ENST00000608952 331 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 AL078604.3-201ENST00000615580 211 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.42□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.28-201ENST00000362554 111 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 RNU6-797P-201ENST00000363101 109 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.143-201ENST00000363520 106 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.331-201ENST00000365267 102 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.439-201ENST00000384119 94 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 RNU6-424P-201ENST00000384367 105 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 MIR660-201ENST00000385235 97 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 SNORA40.6-201ENST00000391153 128 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AC233266.1-201ENST00000454518 96 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.631-201ENST00000459607 101 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AC010655.3-201ENST00000478818 450 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 RNA5SP168-201ENST00000516642 112 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AL160236.1-201ENST00000556317 195 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AC242852.1-201ENST00000612151 96 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 MIR7974-201ENST00000615835 79 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AL353770.2-201ENST00000620024 78 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 AC244015.1-201ENST00000622301 99 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 SNORD3E-202ENST00000627253 216 ntBASIC1.41□□□□□ -2.18
CPSF3Q9UKF6 Y_RNA.551-201ENST00000384661 102 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 U8.16-201ENST00000391279 133 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 RNU4-30P-201ENST00000410245 143 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 SNORA25.10-201ENST00000515926 124 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AL358944.1-201ENST00000528537 144 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC136932.1-201ENST00000574771 208 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 MIR4778-201ENST00000577635 80 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC104695.3-201ENST00000604052 296 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 AC011373.1-201ENST00000607270 237 ntBASIC1.4□□□□□ -2.19
CPSF3Q9UKF6 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 AL391987.6-201ENST00000305671 199 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 MIRLET7C-201ENST00000362160 84 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RNU4-41P-201ENST00000364426 143 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RNU6-450P-201ENST00000364654 107 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 SNORD63-201ENST00000384262 68 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RPL23AP36-201ENST00000413895 458 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 AL390729.2-201ENST00000416137 156 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 Z98949.2-201ENST00000440996 144 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RNU7-28P-201ENST00000516759 62 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RNU7-110P-201ENST00000516891 62 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 DEFB117-201ENST00000602356 141 ntBASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
CPSF3Q9UKF6 RNU6-1080P-201ENST00000383982 107 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.424-201ENST00000384063 103 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 RNA5SP482-201ENST00000391269 118 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 SNX2P2-201ENST00000424553 323 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AL135790.2-201ENST00000437701 267 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 RPS20P10-201ENST00000451209 253 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AL049830.1-201ENST00000468034 425 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AC092991.1-201ENST00000477176 376 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 RNU6-1046P-201ENST00000516538 107 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.713-201ENST00000517013 96 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AC124312.5-201ENST00000604451 268 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AL359821.1-201ENST00000605519 182 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AL157834.3-201ENST00000615543 103 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AC106754.2-201ENST00000623006 233 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 AC134503.1-201ENST00000633048 54 ntBASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.128-201ENST00000363391 112 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.286-201ENST00000364813 102 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 SNORA22B-201ENST00000383876 138 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 RNU6-823P-201ENST00000391042 103 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 MTCO2P12-201ENST00000427426 682 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 AC108729.3-201ENST00000513484 108 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.711-201ENST00000516993 102 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.715-201ENST00000517082 110 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 AL512310.8-201ENST00000550183 120 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 RAC1P9-201ENST00000604990 392 ntBASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.37□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.216-201ENST00000364205 93 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 MIR150-201ENST00000385048 84 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 AL590004.1-201ENST00000405321 300 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 197.5 ms