Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.462-201ENST00000384268 102 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 RNU6-710P-201ENST00000410424 105 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 AC022028.1-201ENST00000412054 408 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 MCFD2P1-201ENST00000417812 300 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 MTATP6P23-201ENST00000440153 476 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 CYCTP-201ENST00000504253 315 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 RNU6-966P-201ENST00000516479 104 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 RNU6-165P-201ENST00000517170 99 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.4□□□□□ -2.19
VPS28Q9UK41 MIR4423-201ENST00000580922 80 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 AC004832.4-201ENST00000608952 331 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 AC068647.2-201ENST00000637380 353 ntBASIC1.4□□□□□ -2.19
VPS28Q9UK41 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
VPS28Q9UK41 RNA5SP327-201ENST00000362494 101 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 SNORA25.8-201ENST00000364831 128 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.39□□□□□ -2.19
VPS28Q9UK41 DYNLT3P2-201ENST00000442517 295 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AC093850.1-201ENST00000454121 251 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 RNU6-1170P-201ENST00000515974 106 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 RNU6-917P-201ENST00000516294 104 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 Y_RNA.713-201ENST00000517013 96 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AC011604.1-201ENST00000545978 196 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AL117336.2-201ENST00000602435 335 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AC120024.3-201ENST00000603167 156 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AL133255.1-201ENST00000606374 441 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 SNORD58B-201ENST00000607313 66 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 AL157834.3-201ENST00000615543 103 ntBASIC1.39□□□□□ -2.19
VPS28Q9UK41 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.38□□□□□ -2.19
VPS28Q9UK41 AL391987.6-201ENST00000305671 199 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 SNORD68-201ENST00000363214 84 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 RNU6-833P-201ENST00000363486 107 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 Y_RNA.329-201ENST00000365209 107 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 Y_RNA.458-201ENST00000384240 102 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 MIR891A-201ENST00000401237 79 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 MTND4LP11-201ENST00000422184 280 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 AL357312.1-201ENST00000603879 298 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 AC005972.2-201ENST00000604690 348 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 AC006157.1-201ENST00000611750 366 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 AC027279.3-201ENST00000625055 122 ntBASIC1.38□□□□□ -2.19
VPS28Q9UK41 Y_RNA.331-201ENST00000365267 102 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 RNU6-163P-201ENST00000384396 106 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 RNY1P14-201ENST00000384426 108 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 SNORD41-201ENST00000386967 70 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.37□□□□□ -2.19
VPS28Q9UK41 RPS20P10-201ENST00000451209 253 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 AC093852.1-201ENST00000503587 266 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 RNU6-1053P-201ENST00000515930 101 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 RNU6-475P-201ENST00000516073 104 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 AL160236.1-201ENST00000556317 195 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 AL080274.1-201ENST00000605565 220 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 AL591926.4-201ENST00000616895 298 ntBASIC1.37□□□□□ -2.19
VPS28Q9UK41 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.37□□□□□ -2.19
VPS28Q9UK41 Y_RNA.112-201ENST00000363250 102 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 Y_RNA.172-201ENST00000363765 102 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 RNU4-50P-201ENST00000364361 141 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 U8.5-201ENST00000364528 136 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 Y_RNA.431-201ENST00000384086 102 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 Y_RNA.439-201ENST00000384119 94 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 MIR758-201ENST00000390227 88 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 RNU6-855P-201ENST00000410395 104 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AC024067.1-201ENST00000426199 223 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 MTND1P14-201ENST00000427400 950 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AC092473.1-201ENST00000441098 221 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 RNU1-123P-201ENST00000458950 160 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 U8.19-201ENST00000459095 133 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 U8.20-201ENST00000459445 131 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.36□□□□□ -2.19
VPS28Q9UK41 AL359821.1-201ENST00000605519 182 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AC011373.1-201ENST00000607270 237 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AL353770.2-201ENST00000620024 78 ntBASIC1.36□□□□□ -2.19
VPS28Q9UK41 AC104332.1-201ENST00000440471 797 ntBASIC1.35□□□□□ -2.19
VPS28Q9UK41 RNU7-110P-201ENST00000516891 62 ntBASIC1.35□□□□□ -2.19
VPS28Q9UK41 RNU6-1116P-201ENST00000517269 99 ntBASIC1.35□□□□□ -2.19
VPS28Q9UK41 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
VPS28Q9UK41 AL008636.1-201ENST00000625038 1018 ntBASIC1.35□□□□□ -2.19
VPS28Q9UK41 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
VPS28Q9UK41 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
VPS28Q9UK41 Y_RNA.80-201ENST00000362996 102 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 SNORA72-201ENST00000384339 132 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 Y_RNA.485-201ENST00000384395 102 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 MIR150-201ENST00000385048 84 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS28Q9UK41 PIGPP3-201ENST00000425307 415 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.34□□□□□ -2.19
VPS28Q9UK41 AC015922.2-201ENST00000435593 184 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 RPL39P39-201ENST00000455840 151 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 AC004223.1-201ENST00000479840 271 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 AC040926.1-201ENST00000530195 238 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 AC068338.1-201ENST00000565567 176 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 MIR4762-201ENST00000585261 75 ntBASIC1.34□□□□□ -2.19
VPS28Q9UK41 Y_RNA.253-201ENST00000364562 112 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 Y_RNA.341-201ENST00000365341 102 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 SNORD14.1-201ENST00000365609 90 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 SNORD63-201ENST00000384262 68 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 Y_RNA.471-201ENST00000384312 102 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 SNORA25-201ENST00000384384 134 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 Y_RNA.551-201ENST00000384661 102 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 MIR618-201ENST00000385287 98 ntBASIC1.33□□□□□ -2.2
VPS28Q9UK41 AL133373.1-201ENST00000497098 94 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms