Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MIR221-201ENST00000385135 110 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 RNU6-918P-201ENST00000391219 106 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 AL163195.1-201ENST00000496941 348 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 SNORA31.25-201ENST00000517242 134 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 AC091178.2-201ENST00000584401 117 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.802-201ENST00000614892 130 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 MIR6079-201ENST00000635807 62 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
TDP1Q9NUW8 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.32□□□□□ -2.04
TDP1Q9NUW8 AC018630.2-201ENST00000534866 2403 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 SNORD114-1-201ENST00000362705 72 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 SNORA8.3-201ENST00000384679 139 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 MIR626-201ENST00000385032 94 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 MIR520G-201ENST00000385064 90 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 MIR526A2-201ENST00000390198 65 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
TDP1Q9NUW8 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.32□□□□□ -2.04
TDP1Q9NUW8 AP002392.1-201ENST00000537692 208 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 MIR5094-201ENST00000578766 85 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.32□□□□□ -2.04
TDP1Q9NUW8 ZNF271P-202ENST00000465539 1970 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 AP006437.1-201ENST00000641440 3685 ntBASIC2.32□□□□□ -2.04
TDP1Q9NUW8 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
TDP1Q9NUW8 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
TDP1Q9NUW8 RNU4-17P-201ENST00000365598 141 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.572-201ENST00000384757 98 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 RNU11-5P-201ENST00000391216 129 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 RNU6-383P-201ENST00000410864 94 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 COX6CP10-201ENST00000416832 224 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 PIGPP3-201ENST00000425307 415 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 RNU6-437P-201ENST00000459408 95 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC107393.1-201ENST00000512403 346 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC011604.1-201ENST00000545978 196 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 MIR4724-201ENST00000579485 89 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AL929325.1-201ENST00000603096 117 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC069114.2-201ENST00000604699 304 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC245884.12-201ENST00000615364 59 ntBASIC2.31□□□□□ -2.04
TDP1Q9NUW8 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
TDP1Q9NUW8 AC100821.1-201ENST00000523153 2479 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.24-201ENST00000362508 103 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 SNORA64-201ENST00000384674 134 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
TDP1Q9NUW8 RNA5SP181-201ENST00000410246 98 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 RNVU1-2-201ENST00000516326 135 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 RNU6-1291P-201ENST00000516591 104 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 AC022559.1-201ENST00000520905 205 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 MIR4524B-201ENST00000581569 115 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 AC098479.1-201ENST00000609225 154 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 MIR219B-201ENST00000637023 88 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.3□□□□□ -2.04
TDP1Q9NUW8 AC007336.1-201ENST00000576365 3828 ntBASIC2.3□□□□□ -2.04
TDP1Q9NUW8 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.3□□□□□ -2.04
TDP1Q9NUW8 MIR6073-201ENST00000352083 89 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 MIR367-201ENST00000362299 68 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU6-674P-201ENST00000363831 107 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 snoU2_19.4-201ENST00000364329 80 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU6-969P-201ENST00000383900 105 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 SNORA48.1-201ENST00000390879 135 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU6-381P-201ENST00000391259 108 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 MIR1289-2-201ENST00000408360 111 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 AC245047.4-201ENST00000433189 144 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU7-120P-201ENST00000459334 63 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNA5SP200-201ENST00000516360 103 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 RNU6-341P-201ENST00000516973 96 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.29□□□□□ -2.04
TDP1Q9NUW8 AC121758.2-201ENST00000553271 193 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 AC009831.4-201ENST00000620744 325 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 MIR6132-201ENST00000622083 109 ntBASIC2.29□□□□□ -2.04
TDP1Q9NUW8 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.29□□□□□ -2.04
TDP1Q9NUW8 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.28□□□□□ -2.04
TDP1Q9NUW8 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
TDP1Q9NUW8 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNU6-1019P-201ENST00000364424 107 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.267-201ENST00000364679 109 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNU1-51P-201ENST00000365345 176 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 Y_RNA.435-201ENST00000384095 112 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNA5SP501-201ENST00000410990 112 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNA5SP450-201ENST00000411206 102 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AL606517.2-201ENST00000442855 241 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AC233266.1-201ENST00000454518 96 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNU7-94P-201ENST00000459576 63 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 RNU6-237P-201ENST00000515985 71 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AC084364.2-201ENST00000546924 395 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 MIR4529-201ENST00000578110 78 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 MIR5688-201ENST00000580619 83 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AC022217.4-201ENST00000604389 163 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AC072026.1-201ENST00000605023 201 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AL137847.3-201ENST00000611521 109 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 AC242852.1-201ENST00000612151 96 ntBASIC2.28□□□□□ -2.04
TDP1Q9NUW8 FTX_2.1-201ENST00000618816 94 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms