Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC236972.2-201ENST00000434979 310 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 DYNLT3P2-201ENST00000442517 295 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 MTND5P20-201ENST00000448677 143 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 SNORD19B-201ENST00000459623 84 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC004223.1-201ENST00000479840 271 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.13□□□□□ -2.23
DDX28Q9NUL7 RNU6-922P-201ENST00000516753 99 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 RNA5SP102-201ENST00000516865 106 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC006600.1-201ENST00000572529 153 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC011476.5-201ENST00000615594 130 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 U6.92-201ENST00000636464 89 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC068647.2-201ENST00000637380 353 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.446-201ENST00000384178 104 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 RNU6-708P-201ENST00000384217 107 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 SNORA40.6-201ENST00000391153 128 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.12□□□□□ -2.23
DDX28Q9NUL7 CHEK2P4-201ENST00000450340 246 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 AC093850.1-201ENST00000454121 251 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 RNU6-155P-201ENST00000516347 100 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.12□□□□□ -2.23
DDX28Q9NUL7 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.12□□□□□ -2.23
DDX28Q9NUL7 SNORA4-201ENST00000584302 138 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 AC022441.3-201ENST00000605737 136 ntBASIC1.12□□□□□ -2.23
DDX28Q9NUL7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.12□□□□□ -2.23
DDX28Q9NUL7 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.12□□□□□ -2.23
DDX28Q9NUL7 RNU6-324P-201ENST00000363957 106 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 SNORA70.7-201ENST00000384159 133 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.529-201ENST00000384586 119 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 AL451046.2-201ENST00000403074 277 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 RNU2-61P-201ENST00000411069 191 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 AL133373.1-201ENST00000497098 94 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 RNU6-436P-201ENST00000516171 114 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 RNU6-917P-201ENST00000516294 104 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 MIR548S-201ENST00000581352 82 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 AC091925.1-201ENST00000623204 462 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 MIR4272-201ENST00000635924 64 ntBASIC1.11□□□□□ -2.23
DDX28Q9NUL7 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.11□□□□□ -2.23
DDX28Q9NUL7 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
DDX28Q9NUL7 RNU6-833P-201ENST00000363486 107 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.356-201ENST00000365475 113 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 RNY1P14-201ENST00000384426 108 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 RNU6-1105P-201ENST00000384774 107 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 MIR489-201ENST00000384923 84 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.1□□□□□ -2.23
DDX28Q9NUL7 RPS4XP11-201ENST00000446897 772 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.1□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.702-201ENST00000516843 96 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 AL117336.2-201ENST00000602435 335 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 HSPE1P19-201ENST00000603327 295 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 AC010205.1-201ENST00000616668 449 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 AL138825.1-201ENST00000618587 192 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 AC027279.3-201ENST00000625055 122 ntBASIC1.1□□□□□ -2.23
DDX28Q9NUL7 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.09□□□□□ -2.23
DDX28Q9NUL7 RNU6-1115P-201ENST00000362490 106 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.252-201ENST00000364556 101 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 SNORA25-201ENST00000384384 134 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 SNORD41-201ENST00000386967 70 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 MIR891A-201ENST00000401237 79 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.621-201ENST00000411065 96 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 RNU6-1054P-201ENST00000411293 104 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 MRPL35P3-201ENST00000421557 364 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.09□□□□□ -2.23
DDX28Q9NUL7 RPEP5-201ENST00000441137 268 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 CYCTP-201ENST00000504253 315 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 RNU6-507P-201ENST00000516045 100 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 RN7SKP295-201ENST00000517264 153 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 AC022616.4-201ENST00000522985 181 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 AL357312.1-201ENST00000603879 298 ntBASIC1.09□□□□□ -2.23
DDX28Q9NUL7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.09□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.39-201ENST00000362620 98 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 RNU1-115P-201ENST00000365329 160 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 RNU6-1080P-201ENST00000383982 107 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.466-201ENST00000384294 113 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 SNORD116-13-201ENST00000384408 92 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AL390729.2-201ENST00000416137 156 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 RNU6-976P-201ENST00000516086 111 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AC011604.1-201ENST00000545978 196 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AC092447.9-201ENST00000603395 144 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AC136443.5-201ENST00000603741 370 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 AC005972.2-201ENST00000604690 348 ntBASIC1.08□□□□□ -2.24
DDX28Q9NUL7 SNORD68-201ENST00000363214 84 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RNU6-1175P-201ENST00000365200 107 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 SNORA22-201ENST00000383907 134 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.462-201ENST00000384268 102 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RNU6-163P-201ENST00000384396 106 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.496-201ENST00000384444 101 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 SNORA22C-201ENST00000384614 134 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.570-201ENST00000384750 101 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RNU6-710P-201ENST00000410424 105 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 MCFD2P1-201ENST00000417812 300 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 AF228730.4-201ENST00000421457 183 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 AC005042.3-201ENST00000453230 174 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 Y_RNA.661-201ENST00000516003 99 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 SNORA31.4-201ENST00000516049 129 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RNU6-966P-201ENST00000516479 104 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 SNORA40.14-201ENST00000516543 86 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 RNA5SP404-201ENST00000517118 132 ntBASIC1.07□□□□□ -2.24
DDX28Q9NUL7 SNORA70.22-201ENST00000517160 124 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms