Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RPL21P38-201ENST00000418090 167 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 RNY3P15-201ENST00000516297 97 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 SNORA40.15-201ENST00000516884 107 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 AC110588.1-201ENST00000559699 137 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 MIR4778-201ENST00000577635 80 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 MIR6852-201ENST00000621699 66 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 AC068647.2-201ENST00000637380 353 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 ZNF355P-201ENST00000427301 3216 ntBASIC1.46□□□□□ -2.18
CHMP1AQ9HD42 SNORA72-201ENST00000384339 132 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 MIR583-201ENST00000384846 75 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 MIR215-201ENST00000384858 110 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 RN7SKP51-201ENST00000410781 304 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.621-201ENST00000411065 96 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 AC113618.1-201ENST00000416747 285 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 AC024067.1-201ENST00000426199 223 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 RNU6-191P-201ENST00000516295 94 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 RNU6-902P-201ENST00000517212 91 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 RNU6-1116P-201ENST00000517269 99 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 AL591926.4-201ENST00000616895 298 ntBASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
CHMP1AQ9HD42 AC092881.1-201ENST00000638218 2733 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 RNU4-90P-201ENST00000362773 141 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.64-201ENST00000362845 102 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 AC093850.1-201ENST00000454121 251 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 MRPS35P2-201ENST00000508242 191 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 MIR4648-201ENST00000580107 72 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 AC106754.2-201ENST00000623006 233 ntBASIC1.44□□□□□ -2.18
CHMP1AQ9HD42 SNORD33-201ENST00000362761 85 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.136-201ENST00000363444 102 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RNU6-457P-201ENST00000363999 107 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RNU6-1048P-201ENST00000364054 107 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RNU6-801P-201ENST00000364087 105 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 U8.7-201ENST00000364940 136 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.541-201ENST00000384640 113 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 MIR9-3-201ENST00000385084 90 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 SNORA40.18-201ENST00000391200 128 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RNU2-14P-201ENST00000411053 191 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 AC104332.1-201ENST00000440471 797 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 UBE2DNL-203ENST00000474922 222 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 AC092991.1-201ENST00000477176 376 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 RPS29P11-201ENST00000496507 171 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 MIR3937-201ENST00000580135 106 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 AP003357.1-201ENST00000604497 148 ntBASIC1.43□□□□□ -2.18
CHMP1AQ9HD42 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 SNORD68-201ENST00000363214 84 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.152-201ENST00000363578 100 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.253-201ENST00000364562 112 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 Y_RNA.569-201ENST00000384749 103 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RPL30P13-201ENST00000418873 348 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 SNX2P2-201ENST00000424553 323 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 MTCO1P5-201ENST00000433573 344 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AC117454.1-201ENST00000491120 168 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RNU7-12P-201ENST00000516030 62 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RNA5SP182-201ENST00000516064 82 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RNU7-115P-201ENST00000516433 55 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AC136628.3-201ENST00000521868 290 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AC024405.2-202ENST00000532731 184 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 POLR3GP1-201ENST00000594073 261 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 AC084768.2-201ENST00000622736 221 ntBASIC1.42□□□□□ -2.18
CHMP1AQ9HD42 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 RNU6-290P-201ENST00000365212 101 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 SNORA26.5-201ENST00000391215 123 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 RPL39P38-201ENST00000467018 153 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 RNU7-116P-201ENST00000516940 62 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 AP003733.2-201ENST00000529409 171 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 MIR4762-201ENST00000585261 75 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 AL078604.3-201ENST00000615580 211 ntBASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.41□□□□□ -2.18
CHMP1AQ9HD42 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
CHMP1AQ9HD42 RNU6-199P-201ENST00000362954 107 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 U8.5-201ENST00000364528 136 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 Y_RNA.422-201ENST00000384054 114 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 SNORA72.4-201ENST00000384174 132 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 MIR522-201ENST00000385071 87 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 AL731563.1-201ENST00000442202 214 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 RNU7-141P-201ENST00000459304 62 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 RNU6-917P-201ENST00000516294 104 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 AC127455.1-201ENST00000565496 145 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 AP001485.1-201ENST00000604799 199 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 MIR548AY-201ENST00000617669 107 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 AL121890.5-201ENST00000620848 304 ntBASIC1.4□□□□□ -2.19
CHMP1AQ9HD42 Y_RNA.16-201ENST00000362421 102 ntBASIC1.39□□□□□ -2.19
CHMP1AQ9HD42 RNU6-1065P-201ENST00000384513 106 ntBASIC1.39□□□□□ -2.19
CHMP1AQ9HD42 RNU6-1011P-201ENST00000384668 107 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms