Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
UPF3AQ9H1J1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU4-90P-201ENST00000362773 141 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 snoU2-30.2-201ENST00000362805 70 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.224-201ENST00000364308 111 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-53P-201ENST00000365367 106 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.452-201ENST00000384202 108 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-196P-201ENST00000384315 107 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-21P-201ENST00000384710 107 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-417P-201ENST00000384712 107 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-713P-201ENST00000384761 107 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 MIR29C-201ENST00000385231 88 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP450-201ENST00000411206 102 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 AL390729.2-201ENST00000416137 156 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 AC008134.1-201ENST00000420943 193 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 AC010598.1-201ENST00000510378 103 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.680-201ENST00000516441 93 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 AP005660.1-201ENST00000522972 293 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 DEFB108E-201ENST00000524692 240 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 MIR3149-201ENST00000584629 83 ntBASIC1.62□□□□□ -2.15
UPF3AQ9H1J1 RNU6-862P-201ENST00000362804 105 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RNU4-80P-201ENST00000363200 141 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.122-201ENST00000363331 96 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.136-201ENST00000363444 102 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP467-201ENST00000391274 118 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RNU2-38P-201ENST00000410856 79 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 MTCO1P5-201ENST00000433573 344 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 HSPE1P21-201ENST00000438283 308 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 AC245517.4-201ENST00000448601 281 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 AC245102.2-201ENST00000448956 180 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 SNORD127-201ENST00000458892 86 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RNVU1-2-201ENST00000516326 135 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP102-201ENST00000516865 106 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 RPL21P9-201ENST00000556149 474 ntBASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.61□□□□□ -2.15
UPF3AQ9H1J1 AC068700.1-201ENST00000565862 3754 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 RNU6-117P-201ENST00000365415 107 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.569-201ENST00000384749 103 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 RNU11-3P-201ENST00000391111 133 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 MIR873-201ENST00000401120 77 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 MIR1304-201ENST00000408243 91 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 MIR1302-6-201ENST00000408466 90 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 RPS26P55-201ENST00000471178 356 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 RNU6-191P-201ENST00000516295 94 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 RNU6-970P-201ENST00000516312 107 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 SCARNA24.2-201ENST00000516968 130 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 AC012433.1-201ENST00000588916 398 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 AC006380.1-201ENST00000603598 186 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 AC010900.2-201ENST00000604508 210 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 U6.73-201ENST00000619194 103 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 U4.1-201ENST00000620349 87 ntBASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.6□□□□□ -2.15
UPF3AQ9H1J1 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 U8.1-201ENST00000362843 134 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNU1-22P-201ENST00000363334 158 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNU6-324P-201ENST00000363957 106 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNU1-96P-201ENST00000364163 162 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 SNORD116-13-201ENST00000384408 92 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 Y_RNA.562-201ENST00000384695 113 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 SNORA40.19-201ENST00000390846 128 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP501-201ENST00000410990 112 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 AC245047.4-201ENST00000433189 144 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 POLR2KP2-201ENST00000438155 177 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 snoU13.18-201ENST00000459483 104 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 SERF1AP1-201ENST00000514575 187 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNA5SP20-201ENST00000515976 84 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 RNU6-63P-201ENST00000516690 95 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 MIR4285-201ENST00000581001 85 ntBASIC1.59□□□□□ -2.15
UPF3AQ9H1J1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AP000648.3-201ENST00000623539 4507 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 SNORD114-7-201ENST00000362520 77 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 RNU6-407P-201ENST00000365280 104 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 RNA5SP465-201ENST00000391195 109 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 RNU6-1337P-201ENST00000516525 95 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 RNU2-31P-201ENST00000516954 155 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 MIR4643-201ENST00000577473 78 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 MIR3684-201ENST00000579779 74 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 SNORA4-201ENST00000584302 138 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 MIR4438-201ENST00000585271 93 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC005786.1-201ENST00000588553 154 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC006435.5-201ENST00000624486 112 ntBASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
UPF3AQ9H1J1 MIR335-201ENST00000362173 94 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms