Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC068137.3-201ENST00000639191 341 ntBASIC0.08□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.106-201ENST00000363189 100 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.361-201ENST00000365515 120 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.615-201ENST00000410769 117 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 HMGN1P33-201ENST00000432945 451 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 SNRPGP12-201ENST00000449481 213 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 RNU6-956P-201ENST00000458868 103 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 SNORA25.10-201ENST00000515926 124 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 AC018448.1-201ENST00000552843 316 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 AL162730.1-201ENST00000605734 292 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 AL355073.2-201ENST00000612106 557 ntBASIC0.07□□□□□ -2.4
CCDC112Q8NEF3 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 ZNF299P-201ENST00000406845 1804 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 RNU4-45P-201ENST00000365469 141 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.490-201ENST00000384413 102 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 DLGAP5P1-201ENST00000430307 464 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 SUMO1P2-201ENST00000452524 304 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 NDUFA4P2-201ENST00000489989 244 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 RNU6-256P-201ENST00000516747 97 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 LRRC34P1-201ENST00000542742 915 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 AL355375.2-201ENST00000574825 175 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 MIR3612-201ENST00000579753 87 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 MIR5190-201ENST00000581537 80 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 MIR548AR-201ENST00000582191 57 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 AC012433.1-201ENST00000588916 398 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 AC092634.7-201ENST00000621022 103 ntBASIC0.06□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.212-201ENST00000364177 102 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 RNU6-580P-201ENST00000365159 107 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.412-201ENST00000384001 104 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.498-201ENST00000384460 102 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 MIR520H-201ENST00000385126 88 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 SNORD28B-201ENST00000390993 75 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 SNORD83.1-201ENST00000411362 77 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 MTND1P26-201ENST00000440488 538 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.706-201ENST00000516933 99 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 MTND2P38-201ENST00000522536 667 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 AC010525.2-201ENST00000590920 195 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 RBM11P1-201ENST00000604951 799 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 AC104260.1-201ENST00000616660 539 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 AC078938.1-201ENST00000620993 318 ntBASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.05□□□□□ -2.4
CCDC112Q8NEF3 RNU6-1085P-201ENST00000363576 107 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 MIR518A1-201ENST00000385068 85 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 snoU13.21-201ENST00000459368 105 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 TRBVB-201ENST00000477100 408 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 RNU6-1337P-201ENST00000516525 95 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 RNA5SP285-201ENST00000516619 119 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 MIR2115-201ENST00000516657 100 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 AC022523.2-201ENST00000561045 150 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 MIR4273-201ENST00000582824 84 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 RAC1P9-201ENST00000604990 392 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 AC023510.2-201ENST00000622162 746 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 MIR3674-201ENST00000636576 68 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 MIR371B-201ENST00000638082 66 ntBASIC0.04□□□□□ -2.4
CCDC112Q8NEF3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 RNA5SP517-201ENST00000364724 117 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 SNORD50B-201ENST00000364995 70 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 SNORD116-11-201ENST00000383882 92 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 RNU6-306P-201ENST00000384617 107 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 MIR520F-201ENST00000384824 87 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 RNA5SP475-201ENST00000410568 110 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 RNU6-329P-201ENST00000459618 107 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 AC010486.3-201ENST00000511602 785 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 Y_RNA.693-201ENST00000516641 110 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 MIR4305-201ENST00000583252 102 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 AC119751.7-201ENST00000600494 245 ntBASIC0.03□□□□□ -2.4
CCDC112Q8NEF3 RNY1P16-201ENST00000363063 111 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 Y_RNA.148-201ENST00000363557 117 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 SNORD45.3-201ENST00000363836 72 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 Y_RNA.530-201ENST00000384587 101 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 MLLT10P1-201ENST00000418346 262 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 RNU6-863P-201ENST00000515989 104 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 SNORA25.12-201ENST00000516202 82 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 MIR6863-201ENST00000636112 90 ntBASIC0.02□□□□□ -2.41
CCDC112Q8NEF3 snoU2-30.1-201ENST00000365012 70 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 RNU6-396P-201ENST00000365369 105 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 Y_RNA.359-201ENST00000365498 102 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 Y_RNA.368-201ENST00000365547 113 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 SNORA40.8-201ENST00000411034 126 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 SNRPGP10-201ENST00000432323 225 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 RNU6-625P-201ENST00000459412 107 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 AC116353.2-201ENST00000505332 712 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 RNU6-977P-201ENST00000516411 103 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 RNU4-77P-201ENST00000516692 156 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 AC145350.1-201ENST00000567426 208 ntBASIC0.01□□□□□ -2.41
CCDC112Q8NEF3 MIR5701-3-201ENST00000578890 82 ntBASIC0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms