Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 RPL39P25-201ENST00000449384 154 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AL138752.1-201ENST00000452964 351 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC108729.2-201ENST00000476543 840 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNA5SP47-201ENST00000517230 109 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AC026470.2-201ENST00000561492 181 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AP000907.4-201ENST00000604143 237 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 AL136370.1-201ENST00000608166 691 ntBASIC-0.65□□□□□ -2.51
CSPG4Q6UVK1 RNU6-490P-201ENST00000362985 107 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 U8.17-201ENST00000391292 132 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 MIR548L-201ENST00000408303 86 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 MTCO3P19-201ENST00000415864 321 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 MTND1P14-201ENST00000427400 950 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 MTCO2P6-201ENST00000463134 685 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 AC018710.1-201ENST00000506509 158 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 RNU6-430P-201ENST00000517078 107 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 AC024405.2-202ENST00000532731 184 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 AC091948.2-201ENST00000636510 279 ntBASIC-0.66□□□□□ -2.51
CSPG4Q6UVK1 RNA5SP93-201ENST00000362525 114 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 RNU4-1-201ENST00000363925 141 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 RNU6-827P-201ENST00000365553 106 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 SNORA69-201ENST00000383895 132 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 Y_RNA.480-201ENST00000384364 102 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 RNU6-387P-201ENST00000411331 105 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 MTND2P18-201ENST00000419962 1030 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 SUMO1P3-201ENST00000439961 304 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 AC114878.1-201ENST00000441166 358 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 SNORD54-201ENST00000459159 67 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 SNORA27.4-201ENST00000516650 95 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 AF250324.2-201ENST00000608299 610 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 AC022960.3-201ENST00000619794 441 ntBASIC-0.66□□□□□ -2.52
CSPG4Q6UVK1 Y_RNA.6-201ENST00000362350 114 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 RNU6-509P-201ENST00000363519 107 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 RNU6-723P-201ENST00000383973 107 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 MIR4499-201ENST00000584834 69 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 BNIP3P40-201ENST00000596017 556 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AL442067.1-201ENST00000613261 223 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 MIR1246-201ENST00000636535 73 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 MIR655-201ENST00000362159 97 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 Y_RNA.415-201ENST00000384012 112 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 SUMO1P2-201ENST00000452524 304 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 RNU7-181P-201ENST00000517234 74 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AC026421.1-201ENST00000519101 163 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AP003168.1-201ENST00000530091 307 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 MTND4P33-201ENST00000556706 766 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AC138207.3-201ENST00000585289 166 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AL662814.1-201ENST00000617364 121 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AC005562.2-201ENST00000618264 111 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 MIR6514-201ENST00000622549 70 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 AC013437.2-201ENST00000639587 677 ntBASIC-0.67□□□□□ -2.52
CSPG4Q6UVK1 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 RNU6-116P-201ENST00000384042 109 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 RNU6-455P-201ENST00000384681 107 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 MT-TF-201ENST00000387314 71 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC006210.1-201ENST00000424882 111 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 PRDX4P1-201ENST00000507189 574 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 RNU2-56P-201ENST00000516826 190 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC020891.4-201ENST00000605745 93 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC008873.1-201ENST00000625051 138 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC099786.3-201ENST00000565735 1410 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 AC010332.2-201ENST00000613083 1904 ntBASIC-0.68□□□□□ -2.52
CSPG4Q6UVK1 RNU6-407P-201ENST00000365280 104 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 SNORD115-44-201ENST00000365391 82 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 SNORD56B-201ENST00000384713 71 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MTND3P8-201ENST00000412909 339 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 BX276092.1-201ENST00000427368 251 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MTCO2P3-201ENST00000442543 421 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 RNU6-551P-201ENST00000516661 103 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 RNU7-161P-201ENST00000517289 62 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 AC078880.5-201ENST00000617845 421 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 AL078596.1-201ENST00000624856 447 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 AC093726.3-201ENST00000637588 150 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 ZNF299P-201ENST00000406845 1804 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 SNORD87-201ENST00000364849 89 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MIR518F-201ENST00000384973 87 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MIR876-201ENST00000401147 81 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 SNORD93-201ENST00000408813 74 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 SNRPGP14-201ENST00000435400 219 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 ZNF114P1-201ENST00000453500 292 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 RNU6-706P-201ENST00000517229 104 ntBASIC-0.69□□□□□ -2.52
CSPG4Q6UVK1 MTND1P5-201ENST00000517906 940 ntBASIC-0.69□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms