Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 U8.22-201ENST00000459141 133 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 MIR3672-201ENST00000584290 82 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 AC006380.1-201ENST00000603598 186 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 MIR371B-201ENST00000638082 66 ntBASIC-0.07□□□□□ -2.42
CCDC88AQ3V6T2 SNORD114-31-201ENST00000363219 75 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-654P-201ENST00000364373 107 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-282P-201ENST00000365357 103 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-442P-201ENST00000383968 104 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNY1P8-201ENST00000383970 114 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNY3P10-201ENST00000384764 102 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 MIR516B2-201ENST00000385190 85 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 MIR450B-201ENST00000401182 78 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 MTATP6P19-201ENST00000413797 659 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AL358934.1-201ENST00000432346 324 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RPL30P10-201ENST00000488148 337 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU7-175P-201ENST00000515915 61 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-448P-201ENST00000517052 107 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AC091144.1-201ENST00000519573 138 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AC023442.1-201ENST00000531247 422 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AP000753.3-201ENST00000604083 169 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 AC104260.1-201ENST00000616660 539 ntBASIC-0.08□□□□□ -2.42
CCDC88AQ3V6T2 RNA5SP98-201ENST00000363158 137 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 RNU4-9P-201ENST00000364951 139 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 MIR521-1-201ENST00000384902 87 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 AL137792.2-201ENST00000443484 235 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 AC093534.1-201ENST00000504977 132 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 AC010525.2-201ENST00000590920 195 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 uc_338.4-201ENST00000616635 176 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 AC106754.1-201ENST00000562632 1513 ntBASIC-0.09□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-934P-201ENST00000365154 107 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RNU6-596P-201ENST00000365395 98 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RNU2-59P-201ENST00000410482 191 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RPL30P16-201ENST00000419341 429 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RPS29P8-201ENST00000445109 171 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RNU7-66P-201ENST00000459469 62 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 AC018710.1-201ENST00000506509 158 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 RN7SKP287-201ENST00000516546 266 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 AL591926.4-201ENST00000616895 298 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 Z69908.1-201ENST00000622603 247 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 AC124864.2-201ENST00000624736 186 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 MIR4251-201ENST00000635819 61 ntBASIC-0.1□□□□□ -2.42
CCDC88AQ3V6T2 Y_RNA.1-201ENST00000352915 104 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 MIR101-1-201ENST00000362265 75 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-38P-201ENST00000384085 107 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-514P-201ENST00000384208 107 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.571-201ENST00000384753 98 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 MIR214-201ENST00000385214 110 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 MIR892B-201ENST00000401279 77 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 AL445567.1-201ENST00000439121 144 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 ACA59.1-201ENST00000515966 143 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 RN7SKP12-201ENST00000516275 143 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 AC112693.2-201ENST00000556538 232 ntBASIC-0.1□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.296-201ENST00000364930 108 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 U8.7-201ENST00000364940 136 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-790P-201ENST00000384479 105 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-131P-201ENST00000391144 107 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 SNORD100-201ENST00000408573 76 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 RN7SKP142-201ENST00000411236 328 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 EIF1P2-201ENST00000428233 350 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 MTND1P11-201ENST00000456661 876 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 MIR2355-201ENST00000517199 87 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 AC093023.1-201ENST00000547375 507 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 AL118558.2-201ENST00000556294 238 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 AL158211.1-201ENST00000566763 763 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 AC245884.10-201ENST00000597355 337 ntBASIC-0.11□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 MTND3P3-201ENST00000505004 126 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 AC010486.3-201ENST00000511602 785 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 RNA5SP401-201ENST00000515920 127 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 SCARNA8-201ENST00000515924 131 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-1114P-201ENST00000516022 107 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 MIR5188-201ENST00000583467 113 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 SNORA72.3-201ENST00000365074 132 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 SNORA69-201ENST00000383895 132 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 SNORD71-201ENST00000411292 86 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 MIR3678-201ENST00000578455 94 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 AC015726.2-201ENST00000620112 122 ntBASIC-0.12□□□□□ -2.43
CCDC88AQ3V6T2 MIR610-201ENST00000385139 96 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 SEPT7P4-201ENST00000437076 306 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 MIR18B-201ENST00000454574 71 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 RNA5SP227-201ENST00000516184 113 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-232P-201ENST00000517144 64 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 AC091931.1-201ENST00000623488 728 ntBASIC-0.13□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.201-201ENST00000364052 96 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-30P-201ENST00000384561 107 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 HMGN2P22-201ENST00000427588 175 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 MIR4300-201ENST00000581016 96 ntBASIC-0.14□□□□□ -2.43
CCDC88AQ3V6T2 RNU6-94P-201ENST00000607728 107 ntBASIC-0.14□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms