Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
SF3A1Q15459 U8.2-201ENST00000363156 134 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 Y_RNA.416-201ENST00000384014 113 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SF3A1Q15459 Y_RNA.618-201ENST00000410949 107 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.62□□□□□ -1.99
SF3A1Q15459 AL356379.1-201ENST00000414105 126 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.62□□□□□ -1.99
SF3A1Q15459 HMGN2P19-201ENST00000425149 265 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.62□□□□□ -1.99
SF3A1Q15459 Y_RNA.637-201ENST00000459424 114 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AL049830.1-201ENST00000468034 425 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 SNORA31.10-201ENST00000516482 106 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 MIR5007-201ENST00000583098 95 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AC005357.1-201ENST00000588399 301 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.62□□□□□ -1.99
SF3A1Q15459 AL008718.3-201ENST00000610217 321 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AC013791.1-201ENST00000616619 62 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 MIR6766-201ENST00000622641 72 ntBASIC2.62□□□□□ -1.99
SF3A1Q15459 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.62□□□□□ -1.99
SF3A1Q15459 RNU6-1205P-201ENST00000363625 106 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 Y_RNA.293-201ENST00000364908 93 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 Y_RNA.447-201ENST00000384184 113 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 MIR676-201ENST00000390702 67 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 SNORA36B-201ENST00000410438 131 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 SNORA28-201ENST00000606769 126 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 AL627230.6-201ENST00000611129 280 ntBASIC2.61□□□□□ -1.99
SF3A1Q15459 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SF3A1Q15459 Y_RNA.60-201ENST00000362831 98 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 RNU6-414P-201ENST00000363705 104 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 RNU6-211P-201ENST00000384047 107 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 RNU6-439P-201ENST00000384188 106 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 SNORA67.4-201ENST00000384688 142 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.6□□□□□ -1.99
SF3A1Q15459 RNA5SP233-201ENST00000459153 113 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 BX284668.6-201ENST00000606899 438 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 MIR7843-201ENST00000622274 79 ntBASIC2.6□□□□□ -1.99
SF3A1Q15459 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SF3A1Q15459 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.59□□□□□ -1.99
SF3A1Q15459 SNORA20.1-201ENST00000364790 130 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 AL034345.1-201ENST00000407768 123 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 RNU6-651P-201ENST00000411040 105 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 snoU13.26-201ENST00000459452 105 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 AL358944.1-201ENST00000528537 144 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 AC022254.1-201ENST00000567857 235 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 MIR5692C2-201ENST00000577959 77 ntBASIC2.59□□□□□ -1.99
SF3A1Q15459 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.58□□□□□ -2
SF3A1Q15459 RNA5SP289-201ENST00000362332 137 ntBASIC2.58□□□□□ -2
SF3A1Q15459 Y_RNA.65-201ENST00000362846 100 ntBASIC2.58□□□□□ -2
SF3A1Q15459 Y_RNA.188-201ENST00000363952 111 ntBASIC2.58□□□□□ -2
SF3A1Q15459 Y_RNA.478-201ENST00000384358 107 ntBASIC2.58□□□□□ -2
SF3A1Q15459 RNU6-360P-201ENST00000390944 104 ntBASIC2.58□□□□□ -2
SF3A1Q15459 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.58□□□□□ -2
SF3A1Q15459 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.58□□□□□ -2
SF3A1Q15459 FTH1P12-201ENST00000432137 551 ntBASIC2.58□□□□□ -2
SF3A1Q15459 RNU6-437P-201ENST00000459408 95 ntBASIC2.58□□□□□ -2
SF3A1Q15459 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.58□□□□□ -2
SF3A1Q15459 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.58□□□□□ -2
SF3A1Q15459 Y_RNA.680-201ENST00000516441 93 ntBASIC2.58□□□□□ -2
SF3A1Q15459 RNU6-1271P-201ENST00000517049 105 ntBASIC2.58□□□□□ -2
SF3A1Q15459 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
SF3A1Q15459 ZNF720P1-201ENST00000562403 1939 ntBASIC2.58□□□□□ -2
SF3A1Q15459 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.57□□□□□ -2
SF3A1Q15459 Y_RNA.489-201ENST00000384410 101 ntBASIC2.57□□□□□ -2
SF3A1Q15459 RNU6-1031P-201ENST00000384773 107 ntBASIC2.57□□□□□ -2
SF3A1Q15459 MIR504-201ENST00000385065 83 ntBASIC2.57□□□□□ -2
SF3A1Q15459 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.57□□□□□ -2
SF3A1Q15459 RPL23AP42-201ENST00000471152 471 ntBASIC2.57□□□□□ -2
SF3A1Q15459 AC079804.2-201ENST00000490376 200 ntBASIC2.57□□□□□ -2
SF3A1Q15459 MTND1P19-201ENST00000511780 315 ntBASIC2.57□□□□□ -2
SF3A1Q15459 MIR514B-201ENST00000516774 80 ntBASIC2.57□□□□□ -2
SF3A1Q15459 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
SF3A1Q15459 MIR367-201ENST00000362299 68 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.82-201ENST00000363000 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.92-201ENST00000363043 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 SNORD68-201ENST00000363214 84 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.235-201ENST00000364412 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.306-201ENST00000365015 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.312-201ENST00000365089 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.322-201ENST00000365151 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 RNA5SP482-201ENST00000391269 118 ntBASIC2.56□□□□□ -2
SF3A1Q15459 SNORA3.2-201ENST00000408221 125 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.650-201ENST00000459002 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 AC104435.1-201ENST00000483483 166 ntBASIC2.56□□□□□ -2
SF3A1Q15459 RNU6-237P-201ENST00000515985 71 ntBASIC2.56□□□□□ -2
SF3A1Q15459 RNU6-1023P-201ENST00000516137 106 ntBASIC2.56□□□□□ -2
SF3A1Q15459 RNA5SP281-201ENST00000516504 135 ntBASIC2.56□□□□□ -2
SF3A1Q15459 RNU7-28P-201ENST00000516759 62 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.777-201ENST00000516982 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.771-201ENST00000598668 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 Y_RNA.789-201ENST00000622480 102 ntBASIC2.56□□□□□ -2
SF3A1Q15459 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.55□□□□□ -2
SF3A1Q15459 RNU6-661P-201ENST00000362409 107 ntBASIC2.55□□□□□ -2
SF3A1Q15459 Y_RNA.203-201ENST00000364106 102 ntBASIC2.55□□□□□ -2
SF3A1Q15459 MLLT10P1-201ENST00000418346 262 ntBASIC2.55□□□□□ -2
SF3A1Q15459 MRPS17P9-201ENST00000511924 393 ntBASIC2.55□□□□□ -2
SF3A1Q15459 SCARNA16.3-201ENST00000516595 184 ntBASIC2.55□□□□□ -2
SF3A1Q15459 MIR4643-201ENST00000577473 78 ntBASIC2.55□□□□□ -2
SF3A1Q15459 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms