Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC022616.8-201ENST00000533569 253 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 AC018448.1-201ENST00000552843 316 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 MIR5695-201ENST00000579717 85 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 MIR4744-201ENST00000581563 82 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 AC090897.2-201ENST00000581715 130 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 SNRPGP20-201ENST00000604477 205 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.46□□□□□ -2.18
COL4A4P53420 MIR6076-201ENST00000617521 113 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 AC110491.1-201ENST00000562191 2010 ntBASIC1.46□□□□□ -2.18
COL4A4P53420 AC100821.1-201ENST00000523153 2479 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNORA25.1-201ENST00000362326 128 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.23-201ENST00000362496 106 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNORD114-27-201ENST00000363766 70 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU5F-3P-201ENST00000363767 117 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.215-201ENST00000364204 112 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-454P-201ENST00000364292 107 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNORA14A-201ENST00000364773 135 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.357-201ENST00000365487 109 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.488-201ENST00000384403 102 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNORA22C-201ENST00000384614 134 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 MIR186-201ENST00000384988 86 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AL357139.1-201ENST00000407792 426 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-1001P-201ENST00000411265 100 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC1.45□□□□□ -2.18
COL4A4P53420 RPS15AP5-201ENST00000436276 388 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC010409.1-201ENST00000487382 476 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC091959.1-201ENST00000495857 238 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-479P-201ENST00000516348 105 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 HSPE1P4-201ENST00000550617 308 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC055872.1-201ENST00000570978 278 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 MIR4423-201ENST00000580922 80 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AL359881.1-201ENST00000602916 267 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC013791.1-201ENST00000616619 62 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNORA43.4-201ENST00000629559 138 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.45□□□□□ -2.18
COL4A4P53420 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
COL4A4P53420 AC092268.1-201ENST00000342691 405 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-324P-201ENST00000363957 106 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNA5SP205-201ENST00000364653 136 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-1130P-201ENST00000365434 107 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.353-201ENST00000365440 108 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 CD24P4-201ENST00000382840 243 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-44P-201ENST00000384045 107 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.571-201ENST00000384753 98 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-159P-201ENST00000391080 106 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 CBX3P9-201ENST00000402326 552 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 FO393413.1-201ENST00000402892 195 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC012306.1-201ENST00000423267 114 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC006026.2-201ENST00000457376 180 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 snoU13.4-201ENST00000458916 104 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 Y_RNA.637-201ENST00000459424 114 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SNRPGP7-201ENST00000469016 106 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.45□□□□□ -2.18
COL4A4P53420 RNA5SP272-201ENST00000516095 111 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 RNU6-426P-201ENST00000516464 97 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 SUMO2P18-201ENST00000518873 252 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 DNAJC19P2-201ENST00000593340 302 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 AC005520.5-201ENST00000613926 164 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.45□□□□□ -2.18
COL4A4P53420 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.45□□□□□ -2.18
COL4A4P53420 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC1.44□□□□□ -2.18
COL4A4P53420 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
COL4A4P53420 RNU6-151P-201ENST00000364158 107 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 RNU6-1180P-201ENST00000364935 107 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 SNORA46.1-201ENST00000391069 153 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 NDUFS5P4-201ENST00000412983 318 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 BPY2DP-201ENST00000422208 265 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.44□□□□□ -2.18
COL4A4P53420 SEPT7P4-201ENST00000437076 306 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 SNRPGP13-201ENST00000442212 177 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.44□□□□□ -2.18
COL4A4P53420 AC004223.1-201ENST00000479840 271 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 RNU6-966P-201ENST00000516479 104 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 CYCSP23-201ENST00000519781 313 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.44□□□□□ -2.18
COL4A4P53420 AC021739.1-201ENST00000559631 174 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 MIR3145-201ENST00000580727 82 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 MIR6134-201ENST00000617606 109 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 AC010332.2-201ENST00000613083 1904 ntBASIC1.44□□□□□ -2.18
COL4A4P53420 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.43□□□□□ -2.18
COL4A4P53420 AC099654.7-201ENST00000635788 2127 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 Y_RNA.329-201ENST00000365209 107 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 Y_RNA.412-201ENST00000384001 104 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RNU6-239P-201ENST00000390990 99 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 MIR513C-201ENST00000401352 84 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
COL4A4P53420 RNU6-257P-201ENST00000410238 98 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RN7SKP61-201ENST00000410642 295 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RPL30P13-201ENST00000418873 348 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 HMGN2P30-201ENST00000423237 256 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 Z96811.1-201ENST00000445880 108 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 U8.19-201ENST00000459095 133 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RNU6-625P-201ENST00000459412 107 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RNU7-121P-201ENST00000516604 62 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RPPH1-2P-201ENST00000516688 293 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 AC136628.3-201ENST00000521868 290 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 RNU2-4P-201ENST00000606190 192 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 AL078604.3-201ENST00000615580 211 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 Y_RNA.778-201ENST00000620203 90 ntBASIC1.43□□□□□ -2.18
COL4A4P53420 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms