Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-1205P-201ENST00000363625 106 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 RNU6-407P-201ENST00000365280 104 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 RNU6-1135P-201ENST00000411083 103 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 RPS15AP28-201ENST00000435088 386 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 AC097462.1-201ENST00000514125 324 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 RNU6-1278P-201ENST00000516130 107 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 RNU6-1219P-201ENST00000516143 112 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.92□□□□□ -2.1
PDLIM4P50479 MIR4524B-201ENST00000581569 115 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.92□□□□□ -2.1
PDLIM4P50479 AL391903.3-201ENST00000612158 163 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 MIR6132-201ENST00000622083 109 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 AP000553.5-201ENST00000641933 54 ntBASIC1.92□□□□□ -2.1
PDLIM4P50479 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
PDLIM4P50479 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
PDLIM4P50479 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
PDLIM4P50479 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
PDLIM4P50479 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
PDLIM4P50479 AL356292.1-201ENST00000283110 373 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 MIRLET7G-201ENST00000362280 84 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 RNA5SP432-201ENST00000362480 116 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 RNY1P5-201ENST00000383890 115 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 MIR616-201ENST00000385293 97 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 Y_RNA.580-201ENST00000391004 95 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 RNU11-5P-201ENST00000391216 129 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 MIR548M-201ENST00000408260 86 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AC245102.2-201ENST00000448956 180 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AC011406.1-201ENST00000512440 370 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AC015720.1-201ENST00000565251 277 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AC026271.5-201ENST00000577873 130 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 SNORD14A-201ENST00000606526 91 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AC068647.2-201ENST00000637380 353 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 AL359851.1-201ENST00000569460 4997 ntBASIC1.91□□□□□ -2.1
PDLIM4P50479 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
PDLIM4P50479 snoU2-30.2-201ENST00000362805 70 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 SNORA3A-201ENST00000364113 130 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 snoU2_19.4-201ENST00000364329 80 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RNU6-275P-201ENST00000364910 107 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RNY3P5-201ENST00000384127 102 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RNU4-52P-201ENST00000384209 138 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 SNORA72-201ENST00000384339 132 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR221-201ENST00000385135 110 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR1262-201ENST00000408276 93 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR1278-201ENST00000408753 81 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 SNORA11.4-201ENST00000408823 129 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 SNORA36B-201ENST00000410438 131 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RNA5SP511-201ENST00000410487 115 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.9□□□□□ -2.11
PDLIM4P50479 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.9□□□□□ -2.11
PDLIM4P50479 HMGN2P34-201ENST00000437647 269 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 HSPE1P21-201ENST00000438283 308 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RPS27P22-201ENST00000478056 241 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 AC104435.1-201ENST00000483483 166 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.9□□□□□ -2.11
PDLIM4P50479 AC074198.2-201ENST00000508153 258 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 RNU6-255P-201ENST00000516957 105 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR4724-201ENST00000579485 89 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR4744-201ENST00000581563 82 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR4438-201ENST00000585271 93 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 POLR3GP1-201ENST00000594073 261 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 MIR338-201ENST00000636369 67 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 AC092881.1-201ENST00000638218 2733 ntBASIC1.9□□□□□ -2.11
PDLIM4P50479 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
PDLIM4P50479 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.89□□□□□ -2.11
PDLIM4P50479 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
PDLIM4P50479 SNORD114-1-201ENST00000362705 72 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 Y_RNA.293-201ENST00000364908 93 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNU6-160P-201ENST00000384591 107 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 MIR515-2-201ENST00000384883 83 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 MIR515-1-201ENST00000384884 83 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNA5SP496-201ENST00000391240 109 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 AL117342.1-201ENST00000404861 406 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RN7SKP51-201ENST00000410781 304 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 EBAG9P1-201ENST00000418955 543 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 AC117454.1-201ENST00000491120 168 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNU7-99P-201ENST00000516271 62 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNU7-172P-201ENST00000517125 64 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 RNU7-128P-201ENST00000517247 62 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 AC002984.1-201ENST00000591692 448 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 MIR6766-201ENST00000622641 72 ntBASIC1.89□□□□□ -2.11
PDLIM4P50479 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.89□□□□□ -2.11
PDLIM4P50479 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.88□□□□□ -2.11
PDLIM4P50479 SNORD114-6-201ENST00000364393 72 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 Y_RNA.412-201ENST00000384001 104 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 MIR17-201ENST00000385012 84 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 MIR29C-201ENST00000385231 88 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 RNU6-578P-201ENST00000390980 103 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 RNU6-1228P-201ENST00000391014 107 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 MIR1253-201ENST00000408273 105 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 RNU2-2P-201ENST00000410396 191 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 RN7SKP101-201ENST00000411376 320 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 AC018634.1-201ENST00000437554 401 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.88□□□□□ -2.11
PDLIM4P50479 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.88□□□□□ -2.11
PDLIM4P50479 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.88□□□□□ -2.11
PDLIM4P50479 MIR3126-201ENST00000577443 74 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 MIR3144-201ENST00000579460 79 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms