Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL049873.1-201ENST00000480540 376 ntBASIC2.96□□□□□ -1.94
LIG3P49916 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.96□□□□□ -1.94
LIG3P49916 AP002004.2-201ENST00000531656 154 ntBASIC2.96□□□□□ -1.94
LIG3P49916 CYCSP26-201ENST00000534107 320 ntBASIC2.96□□□□□ -1.94
LIG3P49916 EIF4BP1-201ENST00000554881 351 ntBASIC2.96□□□□□ -1.94
LIG3P49916 MIR3169-201ENST00000578032 83 ntBASIC2.96□□□□□ -1.94
LIG3P49916 AC011603.4-201ENST00000611325 277 ntBASIC2.96□□□□□ -1.94
LIG3P49916 AC006386.2-201ENST00000624491 75 ntBASIC2.96□□□□□ -1.94
LIG3P49916 AC012005.1-201ENST00000624575 75 ntBASIC2.96□□□□□ -1.94
LIG3P49916 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.96□□□□□ -1.94
LIG3P49916 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.96□□□□□ -1.94
LIG3P49916 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
LIG3P49916 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.95□□□□□ -1.94
LIG3P49916 SNORD115-3-201ENST00000363100 82 ntBASIC2.95□□□□□ -1.94
LIG3P49916 RNU6-1164P-201ENST00000364428 107 ntBASIC2.95□□□□□ -1.94
LIG3P49916 Y_RNA.251-201ENST00000364551 99 ntBASIC2.95□□□□□ -1.94
LIG3P49916 SNORA22C-201ENST00000384614 134 ntBASIC2.95□□□□□ -1.94
LIG3P49916 MIR29C-201ENST00000385231 88 ntBASIC2.95□□□□□ -1.94
LIG3P49916 Y_RNA.584-201ENST00000391090 114 ntBASIC2.95□□□□□ -1.94
LIG3P49916 SNORA11.4-201ENST00000408823 129 ntBASIC2.95□□□□□ -1.94
LIG3P49916 NDUFA4P2-201ENST00000489989 244 ntBASIC2.95□□□□□ -1.94
LIG3P49916 SCGB1D5P-201ENST00000515134 247 ntBASIC2.95□□□□□ -1.94
LIG3P49916 Y_RNA.714-201ENST00000517065 90 ntBASIC2.95□□□□□ -1.94
LIG3P49916 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.95□□□□□ -1.94
LIG3P49916 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.95□□□□□ -1.94
LIG3P49916 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
LIG3P49916 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
LIG3P49916 Y_RNA.218-201ENST00000364218 104 ntBASIC2.94□□□□□ -1.94
LIG3P49916 SNORD56.5-201ENST00000364281 72 ntBASIC2.94□□□□□ -1.94
LIG3P49916 Y_RNA.242-201ENST00000364473 110 ntBASIC2.94□□□□□ -1.94
LIG3P49916 RNU1-91P-201ENST00000364746 163 ntBASIC2.94□□□□□ -1.94
LIG3P49916 HMGN2P35-201ENST00000412164 270 ntBASIC2.94□□□□□ -1.94
LIG3P49916 CYCSP49-201ENST00000420810 319 ntBASIC2.94□□□□□ -1.94
LIG3P49916 AL139132.1-201ENST00000431587 344 ntBASIC2.94□□□□□ -1.94
LIG3P49916 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.94□□□□□ -1.94
LIG3P49916 AL163195.1-201ENST00000496941 348 ntBASIC2.94□□□□□ -1.94
LIG3P49916 RNU2-56P-201ENST00000516826 190 ntBASIC2.94□□□□□ -1.94
LIG3P49916 RNU6-365P-201ENST00000517113 106 ntBASIC2.94□□□□□ -1.94
LIG3P49916 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.94□□□□□ -1.94
LIG3P49916 MIR3126-201ENST00000577443 74 ntBASIC2.94□□□□□ -1.94
LIG3P49916 U7.2-201ENST00000607576 63 ntBASIC2.94□□□□□ -1.94
LIG3P49916 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.94□□□□□ -1.94
LIG3P49916 MAPK10-266ENST00000641066 6555 ntBASIC2.94□□□□□ -1.94
LIG3P49916 AL035425.3-201ENST00000564206 4996 ntBASIC2.93□□□□□ -1.94
LIG3P49916 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
LIG3P49916 MIR126-201ENST00000362291 85 ntBASIC2.93□□□□□ -1.94
LIG3P49916 SNORA38-201ENST00000363946 132 ntBASIC2.93□□□□□ -1.94
LIG3P49916 RNU6-915P-201ENST00000364943 103 ntBASIC2.93□□□□□ -1.94
LIG3P49916 RNU6-851P-201ENST00000384565 107 ntBASIC2.93□□□□□ -1.94
LIG3P49916 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
LIG3P49916 SNORA12.1-201ENST00000390873 148 ntBASIC2.93□□□□□ -1.94
LIG3P49916 RNA5SP492-201ENST00000411330 114 ntBASIC2.93□□□□□ -1.94
LIG3P49916 AC087685.1-201ENST00000587507 141 ntBASIC2.93□□□□□ -1.94
LIG3P49916 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
LIG3P49916 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.93□□□□□ -1.94
LIG3P49916 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
LIG3P49916 AL365361.1-201ENST00000566942 3481 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORA1B-201ENST00000362535 133 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORA80A-201ENST00000363922 136 ntBASIC2.92□□□□□ -1.94
LIG3P49916 RNU6-1336P-201ENST00000383886 109 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORD116-14-201ENST00000383894 92 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORD116-17-201ENST00000383929 92 ntBASIC2.92□□□□□ -1.94
LIG3P49916 Y_RNA.486-201ENST00000384398 107 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORD116-15-201ENST00000384445 92 ntBASIC2.92□□□□□ -1.94
LIG3P49916 SNORD116-19-201ENST00000384729 92 ntBASIC2.92□□□□□ -1.94
LIG3P49916 AC107083.1-201ENST00000439643 279 ntBASIC2.92□□□□□ -1.94
LIG3P49916 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.92□□□□□ -1.94
LIG3P49916 AL049830.1-201ENST00000468034 425 ntBASIC2.92□□□□□ -1.94
LIG3P49916 MRPS17P9-201ENST00000511924 393 ntBASIC2.92□□□□□ -1.94
LIG3P49916 AL033523.1-201ENST00000605153 153 ntBASIC2.92□□□□□ -1.94
LIG3P49916 RNU1-58P-201ENST00000362413 163 ntBASIC2.91□□□□□ -1.94
LIG3P49916 Y_RNA.71-201ENST00000362892 104 ntBASIC2.91□□□□□ -1.94
LIG3P49916 VTRNA1-1-201ENST00000363120 99 ntBASIC2.91□□□□□ -1.94
LIG3P49916 Y_RNA.127-201ENST00000363386 109 ntBASIC2.91□□□□□ -1.94
LIG3P49916 RNY1P11-201ENST00000363759 113 ntBASIC2.91□□□□□ -1.94
LIG3P49916 SNORA9.2-201ENST00000365361 133 ntBASIC2.91□□□□□ -1.94
LIG3P49916 DEFA7P-201ENST00000382676 285 ntBASIC2.91□□□□□ -1.94
LIG3P49916 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
LIG3P49916 AC099677.2-201ENST00000436385 175 ntBASIC2.91□□□□□ -1.94
LIG3P49916 TRBV12-1-201ENST00000479785 344 ntBASIC2.91□□□□□ -1.94
LIG3P49916 SNORA31.15-201ENST00000516771 132 ntBASIC2.91□□□□□ -1.94
LIG3P49916 AC005786.1-201ENST00000588553 154 ntBASIC2.91□□□□□ -1.94
LIG3P49916 AL591926.4-201ENST00000616895 298 ntBASIC2.91□□□□□ -1.94
LIG3P49916 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
LIG3P49916 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
LIG3P49916 AP006437.1-201ENST00000641440 3685 ntBASIC2.91□□□□□ -1.94
LIG3P49916 Z82195.2-201ENST00000612348 18351 ntBASIC2.9□□□□□ -1.94
LIG3P49916 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.9□□□□□ -1.94
LIG3P49916 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.9□□□□□ -1.95
LIG3P49916 RNU6-80P-201ENST00000384195 107 ntBASIC2.9□□□□□ -1.95
LIG3P49916 RNU1-148P-201ENST00000384472 162 ntBASIC2.9□□□□□ -1.95
LIG3P49916 MTATP6P29-201ENST00000415057 132 ntBASIC2.9□□□□□ -1.95
LIG3P49916 MLLT10P1-201ENST00000418346 262 ntBASIC2.9□□□□□ -1.95
LIG3P49916 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.9□□□□□ -1.95
LIG3P49916 AL135938.1-201ENST00000443141 297 ntBASIC2.9□□□□□ -1.95
LIG3P49916 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.9□□□□□ -1.95
LIG3P49916 RNU6-1333P-201ENST00000516162 93 ntBASIC2.9□□□□□ -1.95
LIG3P49916 RNU6-504P-201ENST00000516568 104 ntBASIC2.9□□□□□ -1.95
LIG3P49916 AC008507.4-201ENST00000585464 127 ntBASIC2.9□□□□□ -1.95
LIG3P49916 AC022202.1-201ENST00000613515 211 ntBASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 157.2 ms