Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC107934.1-201ENST00000522215 217 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 AC140658.3-201ENST00000567603 271 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 ZNF92P2-201ENST00000600543 1059 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 AC005776.1-201ENST00000603164 290 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 SNORD11B-201ENST00000607707 90 ntBASIC-1.29□□□□□ -2.62
CUX1P39880 RNU6-792P-201ENST00000363490 107 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 SNORA24.1-201ENST00000384401 135 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 SNORD38B-201ENST00000384690 67 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC-1.3□□□□□ -2.62
CUX1P39880 AL138752.1-201ENST00000452964 351 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 RNA5SP20-201ENST00000515976 84 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 AGGF1P4-201ENST00000568249 801 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 MIR4280-201ENST00000582178 76 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 Y_RNA.192-201ENST00000363977 102 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 RNU6-726P-201ENST00000364680 107 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 RNU6-827P-201ENST00000365553 106 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 MTND4P3-201ENST00000417829 541 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-1.3□□□□□ -2.62
CUX1P39880 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-1.3□□□□□ -2.62
CUX1P39880 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 RNA5SP54-201ENST00000516951 92 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-1.3□□□□□ -2.62
CUX1P39880 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-1.3□□□□□ -2.62
CUX1P39880 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-1.3□□□□□ -2.62
CUX1P39880 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-1.3□□□□□ -2.62
CUX1P39880 AC069431.2-201ENST00000604149 1099 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 RNU6-88P-201ENST00000606801 100 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 AC137590.2-201ENST00000619709 240 ntBASIC-1.3□□□□□ -2.62
CUX1P39880 AC010332.2-201ENST00000613083 1904 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 RNU6-61P-201ENST00000365528 109 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-1.31□□□□□ -2.62
CUX1P39880 AL359672.1-201ENST00000442302 409 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 RNU6-706P-201ENST00000517229 104 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-1.31□□□□□ -2.62
CUX1P39880 AL157687.1-201ENST00000554853 619 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.31□□□□□ -2.62
CUX1P39880 AC011458.1-201ENST00000604034 617 ntBASIC-1.31□□□□□ -2.62
CUX1P39880 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 Y_RNA.311-201ENST00000365068 96 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 RNU6-609P-201ENST00000365459 107 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 Y_RNA.368-201ENST00000365547 113 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 RNU6-883P-201ENST00000384597 107 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-1.32□□□□□ -2.62
CUX1P39880 MTCO2P11-201ENST00000431069 680 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 AL445193.1-201ENST00000441183 141 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-1.32□□□□□ -2.62
CUX1P39880 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 AC123904.2-201ENST00000548059 300 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 MIR3118-1-201ENST00000581787 76 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 RNU6-86P-201ENST00000606534 107 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 MIR4791-201ENST00000607666 84 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.32□□□□□ -2.62
CUX1P39880 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-1.33□□□□□ -2.62
CUX1P39880 Y_RNA.42-201ENST00000362660 108 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-490P-201ENST00000362985 107 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 SNORD56.2-201ENST00000363242 71 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 SNORD87-201ENST00000364849 89 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-245P-201ENST00000384020 107 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-769P-201ENST00000384407 104 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 MIR516B1-201ENST00000385211 90 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 U8.17-201ENST00000391292 132 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 ZNF736P7Y-201ENST00000425158 820 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 SNRPGP10-201ENST00000432323 225 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 AL158053.1-201ENST00000441503 453 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 AC010587.1-201ENST00000505809 469 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-475P-201ENST00000516073 104 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 SNORD38.3-201ENST00000516599 73 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-201P-201ENST00000517100 61 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 MIR6740-201ENST00000618268 113 ntBASIC-1.33□□□□□ -2.62
CUX1P39880 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.33□□□□□ -2.62
CUX1P39880 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 MT-TY-201ENST00000387409 66 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC090844.1-201ENST00000422019 156 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC137499.1-201ENST00000427602 88 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-1.34□□□□□ -2.62
CUX1P39880 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.34□□□□□ -2.62
CUX1P39880 RPL7P42-201ENST00000481005 679 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 RNA5SP33-201ENST00000516687 98 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC068587.4-201ENST00000533893 186 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-1.34□□□□□ -2.62
CUX1P39880 HIF1AP1-201ENST00000553642 175 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC091965.4-201ENST00000607691 587 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 AC139792.3-201ENST00000623525 224 ntBASIC-1.34□□□□□ -2.62
CUX1P39880 Y_RNA.146-201ENST00000363549 102 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 snoU2-30.1-201ENST00000365012 70 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-1.35□□□□□ -2.62
CUX1P39880 RNU6-207P-201ENST00000384137 107 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 Y_RNA.480-201ENST00000384364 102 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 RNU6-136P-201ENST00000384663 107 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-1.35□□□□□ -2.62
CUX1P39880 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-1.35□□□□□ -2.62
CUX1P39880 MTND4P18-201ENST00000447010 465 ntBASIC-1.35□□□□□ -2.62
CUX1P39880 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-1.35□□□□□ -2.62
CUX1P39880 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-1.35□□□□□ -2.62
CUX1P39880 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.35□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 147.2 ms