Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 RNU6-733P-201ENST00000410759 104 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC093850.1-201ENST00000454121 251 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC091179.3-201ENST00000474761 144 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC117454.1-201ENST00000491120 168 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 PRDX4P1-201ENST00000507189 574 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 RNU6-1337P-201ENST00000516525 95 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 RNU6-922P-201ENST00000516753 99 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AL355375.2-201ENST00000574825 175 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 MIR3684-201ENST00000579779 74 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC125232.2-201ENST00000592457 143 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AL117336.2-201ENST00000602435 335 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC120024.3-201ENST00000603167 156 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 SNORA22-201ENST00000383907 134 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 SNORA22C-201ENST00000384614 134 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 POLR2J4-204ENST00000418424 324 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 RNU6-120P-201ENST00000516077 103 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.76□□□□□ -2.29
SCN1AP35498 AL355073.2-201ENST00000612106 557 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 AC027279.3-201ENST00000625055 122 ntBASIC0.76□□□□□ -2.29
SCN1AP35498 Y_RNA.259-201ENST00000364619 101 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU6-890P-201ENST00000384121 107 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU6-1310P-201ENST00000384153 107 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU6-876P-201ENST00000391295 104 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 MTND1P14-201ENST00000427400 950 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 DYNLT3P2-201ENST00000442517 295 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 MTND5P20-201ENST00000448677 143 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU7-169P-201ENST00000459456 61 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.75□□□□□ -2.29
SCN1AP35498 RNU7-12P-201ENST00000516030 62 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU6-947P-201ENST00000516264 106 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 RNU6-1012P-201ENST00000516606 109 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AC022616.4-201ENST00000522985 181 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AL020996.3-201ENST00000606617 222 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AL021879.1-201ENST00000611756 288 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AC122108.2-201ENST00000611946 526 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AC040896.1-201ENST00000613819 479 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 AC112487.2-201ENST00000637950 304 ntBASIC0.75□□□□□ -2.29
SCN1AP35498 SNORA72.1-201ENST00000363485 129 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 RNY1-201ENST00000364228 113 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 MIR653-201ENST00000385279 96 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 U8.16-201ENST00000391279 133 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 MIR1185-1-201ENST00000408598 86 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.74□□□□□ -2.29
SCN1AP35498 RPL39P28-201ENST00000465655 155 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC091951.2-201ENST00000500762 203 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.74□□□□□ -2.29
SCN1AP35498 RNU6-699P-201ENST00000517081 110 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC015688.6-201ENST00000577737 104 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC025253.1-201ENST00000613623 543 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AL138825.1-201ENST00000618587 192 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 Y_RNA.112-201ENST00000363250 102 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AL031003.1-201ENST00000404229 172 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 MRPS18CP6-201ENST00000423587 223 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC092423.1-201ENST00000430165 186 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AL137792.2-201ENST00000443484 235 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC105758.1-201ENST00000506038 399 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC010598.1-201ENST00000510378 103 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 SNORA31.2-201ENST00000516019 134 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 RNU6-917P-201ENST00000516294 104 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 RNU2-12P-201ENST00000517216 168 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AL022345.2-201ENST00000606307 135 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 AC006157.1-201ENST00000611750 366 ntBASIC0.74□□□□□ -2.29
SCN1AP35498 Y_RNA.187-201ENST00000363918 113 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 Y_RNA.387-201ENST00000383918 102 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 AL034345.1-201ENST00000407768 123 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 MRPS10P1-201ENST00000448483 130 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.73□□□□□ -2.29
SCN1AP35498 AC013244.2-201ENST00000603396 103 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 AC005972.2-201ENST00000604690 348 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.73□□□□□ -2.29
SCN1AP35498 AC010487.4-201ENST00000637027 61 ntBASIC0.73□□□□□ -2.29
SCN1AP35498 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.73□□□□□ -2.29
SCN1AP35498 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
SCN1AP35498 RNA5SP325-201ENST00000363756 130 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 Y_RNA.368-201ENST00000365547 113 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR608-201ENST00000384820 100 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR520G-201ENST00000385064 90 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR618-201ENST00000385287 98 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 AC236972.2-201ENST00000434979 310 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 VN1R91P-201ENST00000594377 169 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 RBM11P1-201ENST00000604951 799 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 AC004467.1-201ENST00000615678 330 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 SEPT14P17-201ENST00000617978 177 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 PVT1_3.1-201ENST00000620853 95 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 AL606534.2-204ENST00000635008 178 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 U6.92-201ENST00000636464 89 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 Y_RNA.471-201ENST00000384312 102 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR526A1-201ENST00000384897 85 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 AL354751.2-201ENST00000415471 210 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MTND5P15-201ENST00000434246 349 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 ELOCP24-201ENST00000456370 334 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 RPL30P15-201ENST00000457129 321 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 AP003484.1-201ENST00000530974 250 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 FRG2DP-202ENST00000566967 323 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR5701-3-201ENST00000578890 82 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR5701-1-201ENST00000585138 82 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR5701-2-201ENST00000615634 82 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 MIR6866-201ENST00000638146 69 ntBASIC0.72□□□□□ -2.29
SCN1AP35498 Y_RNA.39-201ENST00000362620 98 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms