Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.81□□□□□ -2.12
SHMT1P34896 AL512598.1-201ENST00000610158 273 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 AC018630.2-201ENST00000534866 2403 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 RNU6-238P-201ENST00000363313 106 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 RNU6-290P-201ENST00000365212 101 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 RNU6-102P-201ENST00000384485 104 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 Y_RNA.569-201ENST00000384749 103 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 Y_RNA.574-201ENST00000384766 95 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 RNU6-321P-201ENST00000410912 106 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 MTND4LP30-201ENST00000454092 297 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 HMGN1P10-201ENST00000474557 553 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 Y_RNA.676-201ENST00000516393 96 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 DEFB117-201ENST00000602356 141 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 U6.104-201ENST00000637979 90 ntBASIC1.8□□□□□ -2.12
SHMT1P34896 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.79□□□□□ -2.12
SHMT1P34896 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
SHMT1P34896 Y_RNA.136-201ENST00000363444 102 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 Y_RNA.149-201ENST00000363558 117 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 Y_RNA.164-201ENST00000363709 102 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.79□□□□□ -2.12
SHMT1P34896 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.79□□□□□ -2.12
SHMT1P34896 RNU6-950P-201ENST00000384651 107 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 MIR517C-201ENST00000385103 95 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
SHMT1P34896 SNORA67.6-201ENST00000391093 99 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 SNORA53-201ENST00000391141 249 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 SNORA31.17-201ENST00000516953 127 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 AC022254.1-201ENST00000567857 235 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 MIR3122-201ENST00000577243 73 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 MIR4713-201ENST00000582691 75 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 AC037487.3-201ENST00000606668 112 ntBASIC1.79□□□□□ -2.12
SHMT1P34896 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.79□□□□□ -2.12
SHMT1P34896 Y_RNA.84-201ENST00000363011 104 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 RNU6-1309P-201ENST00000363305 108 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 RNU6-1105P-201ENST00000384774 107 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 MIR215-201ENST00000384858 110 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 MIR520G-201ENST00000385064 90 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 RNU6-855P-201ENST00000410395 104 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.78□□□□□ -2.12
SHMT1P34896 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.78□□□□□ -2.12
SHMT1P34896 RPL36AP21-201ENST00000490372 323 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.78□□□□□ -2.12
SHMT1P34896 AL359821.1-201ENST00000605519 182 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.78□□□□□ -2.12
SHMT1P34896 MIR6079-201ENST00000635807 62 ntBASIC1.78□□□□□ -2.12
SHMT1P34896 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SHMT1P34896 Y_RNA.341-201ENST00000365341 102 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 RNU6-326P-201ENST00000365480 107 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 Y_RNA.368-201ENST00000365547 113 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 Y_RNA.456-201ENST00000384232 111 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 Y_RNA.541-201ENST00000384640 113 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 RNU6-360P-201ENST00000390944 104 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 RNA5SP109-201ENST00000391010 116 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 AL162725.1-201ENST00000435405 301 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 HSPE1P9-201ENST00000440046 311 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.77□□□□□ -2.13
SHMT1P34896 AC005840.1-201ENST00000498412 377 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.77□□□□□ -2.13
SHMT1P34896 RNU6-63P-201ENST00000516690 95 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 RNU2-31P-201ENST00000516954 155 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 RNA5SP437-201ENST00000517249 129 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 MIR3145-201ENST00000580727 82 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 AC022217.4-201ENST00000604389 163 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 MIR8062-201ENST00000621515 85 ntBASIC1.77□□□□□ -2.13
SHMT1P34896 Y_RNA.47-201ENST00000362697 108 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 Y_RNA.133-201ENST00000363428 110 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 Y_RNA.418-201ENST00000384029 102 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RNU6-136P-201ENST00000384663 107 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 MIR1302-6-201ENST00000408466 90 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RNA5SP511-201ENST00000410487 115 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RNU6-1203P-201ENST00000410703 110 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 AC245047.3-201ENST00000429428 127 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 FTH1P12-201ENST00000432137 551 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RPS27P1-201ENST00000450552 247 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RPS20P10-201ENST00000451209 253 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 TRBVB-201ENST00000477100 408 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RNU6-341P-201ENST00000516973 96 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 RNU6-570P-201ENST00000517051 105 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 SNORA31.24-201ENST00000517232 57 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 AC091178.2-201ENST00000584401 117 ntBASIC1.76□□□□□ -2.13
SHMT1P34896 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
SHMT1P34896 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.75□□□□□ -2.13
SHMT1P34896 RNU4-80P-201ENST00000363200 141 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 Y_RNA.238-201ENST00000364441 102 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 Y_RNA.310-201ENST00000365063 113 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 Y_RNA.376-201ENST00000365638 108 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 COX6CP10-201ENST00000416832 224 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.75□□□□□ -2.13
SHMT1P34896 AL606517.2-201ENST00000442855 241 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 AC091021.1-201ENST00000468051 388 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 MTCO2P24-201ENST00000515611 426 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.75□□□□□ -2.13
SHMT1P34896 MIR4781-201ENST00000585250 76 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 AC005972.2-201ENST00000604690 348 ntBASIC1.75□□□□□ -2.13
SHMT1P34896 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
SHMT1P34896 SNORA25.1-201ENST00000362326 128 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 Y_RNA.172-201ENST00000363765 102 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 RNU6-514P-201ENST00000384208 107 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 155.8 ms