Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.1□□□□□ -2.07
CIITAP33076 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.1□□□□□ -2.07
CIITAP33076 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.1□□□□□ -2.07
CIITAP33076 ZNF702P-202ENST00000434269 1966 ntBASIC2.09□□□□□ -2.07
CIITAP33076 SNORA33-201ENST00000363664 130 ntBASIC2.09□□□□□ -2.07
CIITAP33076 RNU1-96P-201ENST00000364163 162 ntBASIC2.09□□□□□ -2.07
CIITAP33076 Y_RNA.274-201ENST00000364714 101 ntBASIC2.09□□□□□ -2.07
CIITAP33076 Y_RNA.292-201ENST00000364904 97 ntBASIC2.09□□□□□ -2.07
CIITAP33076 RNU6-407P-201ENST00000365280 104 ntBASIC2.09□□□□□ -2.07
CIITAP33076 RNU6-211P-201ENST00000384047 107 ntBASIC2.09□□□□□ -2.07
CIITAP33076 MIR583-201ENST00000384846 75 ntBASIC2.09□□□□□ -2.07
CIITAP33076 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
CIITAP33076 RNU6-855P-201ENST00000410395 104 ntBASIC2.09□□□□□ -2.07
CIITAP33076 RNU6-710P-201ENST00000410424 105 ntBASIC2.09□□□□□ -2.07
CIITAP33076 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.09□□□□□ -2.07
CIITAP33076 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.09□□□□□ -2.07
CIITAP33076 AC003989.2-201ENST00000440224 169 ntBASIC2.09□□□□□ -2.07
CIITAP33076 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.09□□□□□ -2.07
CIITAP33076 RPS20P10-201ENST00000451209 253 ntBASIC2.09□□□□□ -2.07
CIITAP33076 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.09□□□□□ -2.07
CIITAP33076 RNU6-63P-201ENST00000516690 95 ntBASIC2.09□□□□□ -2.07
CIITAP33076 AL442067.1-201ENST00000613261 223 ntBASIC2.09□□□□□ -2.07
CIITAP33076 AL078604.3-201ENST00000615580 211 ntBASIC2.09□□□□□ -2.07
CIITAP33076 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.09□□□□□ -2.07
CIITAP33076 U6.108-201ENST00000637764 58 ntBASIC2.09□□□□□ -2.07
CIITAP33076 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.09□□□□□ -2.08
CIITAP33076 AC134026.1-201ENST00000623249 2239 ntBASIC2.09□□□□□ -2.08
CIITAP33076 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
CIITAP33076 snoU2-30.2-201ENST00000362805 70 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNU1-22P-201ENST00000363334 158 ntBASIC2.08□□□□□ -2.08
CIITAP33076 Y_RNA.341-201ENST00000365341 102 ntBASIC2.08□□□□□ -2.08
CIITAP33076 SNORA72.4-201ENST00000384174 132 ntBASIC2.08□□□□□ -2.08
CIITAP33076 Y_RNA.456-201ENST00000384232 111 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNU6-417P-201ENST00000384712 107 ntBASIC2.08□□□□□ -2.08
CIITAP33076 MIR676-201ENST00000390702 67 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNU6-1248P-201ENST00000391096 64 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNA5SP212-201ENST00000391223 107 ntBASIC2.08□□□□□ -2.08
CIITAP33076 MIR1283-2-201ENST00000408621 87 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNA5SP247-201ENST00000411181 105 ntBASIC2.08□□□□□ -2.08
CIITAP33076 AL445685.2-201ENST00000422551 342 ntBASIC2.08□□□□□ -2.08
CIITAP33076 BX510359.4-201ENST00000423750 193 ntBASIC2.08□□□□□ -2.08
CIITAP33076 AC099677.2-201ENST00000436385 175 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RPL23AP6-201ENST00000446637 472 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RPL23AP42-201ENST00000471152 471 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RPS29P11-201ENST00000496507 171 ntBASIC2.08□□□□□ -2.08
CIITAP33076 RNU6-138P-201ENST00000515952 107 ntBASIC2.08□□□□□ -2.08
CIITAP33076 SNORA70.12-201ENST00000516084 153 ntBASIC2.08□□□□□ -2.08
CIITAP33076 AC004832.4-201ENST00000608952 331 ntBASIC2.08□□□□□ -2.08
CIITAP33076 AL353149.1-201ENST00000610667 244 ntBASIC2.08□□□□□ -2.08
CIITAP33076 U6.73-201ENST00000619194 103 ntBASIC2.08□□□□□ -2.08
CIITAP33076 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
CIITAP33076 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
CIITAP33076 CENPCP1-201ENST00000533085 2578 ntBASIC2.07□□□□□ -2.08
CIITAP33076 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CIITAP33076 RNU6-271P-201ENST00000363858 105 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RNU6-200P-201ENST00000364743 107 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RNU11-3P-201ENST00000391111 133 ntBASIC2.07□□□□□ -2.08
CIITAP33076 SNORA40.18-201ENST00000391200 128 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RNA5SP467-201ENST00000391274 118 ntBASIC2.07□□□□□ -2.08
CIITAP33076 Y_RNA.590-201ENST00000410140 107 ntBASIC2.07□□□□□ -2.08
CIITAP33076 Y_RNA.626-201ENST00000411288 95 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RPS27P22-201ENST00000478056 241 ntBASIC2.07□□□□□ -2.08
CIITAP33076 MRPS17P9-201ENST00000511924 393 ntBASIC2.07□□□□□ -2.08
CIITAP33076 AC097462.1-201ENST00000514125 324 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.07□□□□□ -2.08
CIITAP33076 MIR3668-201ENST00000582138 75 ntBASIC2.07□□□□□ -2.08
CIITAP33076 MIR3935-201ENST00000583472 104 ntBASIC2.07□□□□□ -2.08
CIITAP33076 AL353997.5-201ENST00000618886 171 ntBASIC2.07□□□□□ -2.08
CIITAP33076 RNU6-23P-201ENST00000363283 107 ntBASIC2.06□□□□□ -2.08
CIITAP33076 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.06□□□□□ -2.08
CIITAP33076 MT-TR-201ENST00000387439 65 ntBASIC2.06□□□□□ -2.08
CIITAP33076 SUMO2P12-201ENST00000405924 140 ntBASIC2.06□□□□□ -2.08
CIITAP33076 MIR1298-201ENST00000408783 112 ntBASIC2.06□□□□□ -2.08
CIITAP33076 AC024067.1-201ENST00000426199 223 ntBASIC2.06□□□□□ -2.08
CIITAP33076 BTF3P11-201ENST00000426582 477 ntBASIC2.06□□□□□ -2.08
CIITAP33076 AC104332.1-201ENST00000440471 797 ntBASIC2.06□□□□□ -2.08
CIITAP33076 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.06□□□□□ -2.08
CIITAP33076 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.06□□□□□ -2.08
CIITAP33076 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.06□□□□□ -2.08
CIITAP33076 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.06□□□□□ -2.08
CIITAP33076 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.06□□□□□ -2.08
CIITAP33076 AC015720.1-201ENST00000565251 277 ntBASIC2.06□□□□□ -2.08
CIITAP33076 MIR4438-201ENST00000585271 93 ntBASIC2.06□□□□□ -2.08
CIITAP33076 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.06□□□□□ -2.08
CIITAP33076 AC073349.3-201ENST00000617616 186 ntBASIC2.06□□□□□ -2.08
CIITAP33076 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
CIITAP33076 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.06□□□□□ -2.08
CIITAP33076 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CIITAP33076 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CIITAP33076 Y_RNA.200-201ENST00000364018 102 ntBASIC2.05□□□□□ -2.08
CIITAP33076 Y_RNA.238-201ENST00000364441 102 ntBASIC2.05□□□□□ -2.08
CIITAP33076 U8.7-201ENST00000364940 136 ntBASIC2.05□□□□□ -2.08
CIITAP33076 Y_RNA.515-201ENST00000384535 112 ntBASIC2.05□□□□□ -2.08
CIITAP33076 RNA5SP511-201ENST00000410487 115 ntBASIC2.05□□□□□ -2.08
CIITAP33076 EBAG9P1-201ENST00000418955 543 ntBASIC2.05□□□□□ -2.08
CIITAP33076 CYCSP49-201ENST00000420810 319 ntBASIC2.05□□□□□ -2.08
CIITAP33076 ATP5J2P3-201ENST00000451550 258 ntBASIC2.05□□□□□ -2.08
CIITAP33076 RNU7-141P-201ENST00000459304 62 ntBASIC2.05□□□□□ -2.08
CIITAP33076 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.05□□□□□ -2.08
CIITAP33076 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms