Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNU6-136P-201ENST00000384663 107 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 RNU5A-5P-201ENST00000411054 116 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 MTCO2P27-201ENST00000420740 428 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.99□□□□□ -2.25
HOXA9P31269 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.99□□□□□ -2.25
HOXA9P31269 FCF1P4-201ENST00000448326 183 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 RNU7-94P-201ENST00000459576 63 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 MTND3P22-201ENST00000510932 243 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 RNU6-911P-201ENST00000516523 104 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.99□□□□□ -2.25
HOXA9P31269 MIR4659A-201ENST00000580269 81 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 MIR4795-201ENST00000584182 89 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 LARP7P1-201ENST00000605576 316 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 AC103810.9-201ENST00000606688 112 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 AC240442.1-201ENST00000616055 283 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 PVT1_3.1-201ENST00000620853 95 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 AC127459.3-201ENST00000624328 466 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 MIR4272-201ENST00000635924 64 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 U6.92-201ENST00000636464 89 ntBASIC0.99□□□□□ -2.25
HOXA9P31269 SNORD114-7-201ENST00000362520 77 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 SNORA1B-201ENST00000362535 133 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNU4-79P-201ENST00000362764 141 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 Y_RNA.80-201ENST00000362996 102 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 Y_RNA.172-201ENST00000363765 102 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 Y_RNA.267-201ENST00000364679 109 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 Y_RNA.485-201ENST00000384395 102 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 MIR598-201ENST00000384868 97 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 SNORD78.2-201ENST00000391076 69 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNU11-5P-201ENST00000391216 129 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.98□□□□□ -2.25
HOXA9P31269 OR9P1P-201ENST00000496431 281 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNU4-77P-201ENST00000516692 156 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNA5SP480-201ENST00000516840 109 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNU6-341P-201ENST00000516973 96 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 RNA5SP404-201ENST00000517118 132 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 CYP3A137P-201ENST00000562436 69 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 AC006600.1-201ENST00000572529 153 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 AC136932.1-201ENST00000574771 208 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 MIR5000-201ENST00000577717 103 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 MIR3973-201ENST00000579824 107 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 SNORD58B-201ENST00000607313 66 ntBASIC0.98□□□□□ -2.25
HOXA9P31269 AC005592.1-201ENST00000566527 1640 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 Y_RNA.27-201ENST00000362540 103 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 RNA5SP259-201ENST00000365541 109 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 Y_RNA.428-201ENST00000384078 102 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 RNU6-376P-201ENST00000384731 106 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 Y_RNA.579-201ENST00000390939 94 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AL034345.1-201ENST00000407768 123 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 RNU2-54P-201ENST00000410299 190 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 RNA5SP511-201ENST00000410487 115 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.97□□□□□ -2.25
HOXA9P31269 RPEP5-201ENST00000441137 268 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 DYNLT3P2-201ENST00000442517 295 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 STAG3L5P-204ENST00000443759 179 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.97□□□□□ -2.25
HOXA9P31269 AC092991.1-201ENST00000477176 376 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 UBL5P1-201ENST00000507979 193 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 RNU6-1291P-201ENST00000516591 104 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 SNORD116.3-201ENST00000517176 78 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.97□□□□□ -2.25
HOXA9P31269 RPL21P9-201ENST00000556149 474 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 VN1R91P-201ENST00000594377 169 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AC092447.9-201ENST00000603395 144 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AC040896.1-201ENST00000613819 479 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 Y_RNA.804-201ENST00000615262 101 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 AC073349.3-201ENST00000617616 186 ntBASIC0.97□□□□□ -2.25
HOXA9P31269 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
HOXA9P31269 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
HOXA9P31269 Y_RNA.252-201ENST00000364556 101 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 Y_RNA.446-201ENST00000384178 104 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 RNU6-505P-201ENST00000384427 107 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 RNU6-342P-201ENST00000384521 104 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL031003.1-201ENST00000404229 172 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.96□□□□□ -2.26
HOXA9P31269 CALM2P4-201ENST00000430810 426 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AC236972.2-201ENST00000434979 310 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 Z98949.2-201ENST00000440996 144 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.96□□□□□ -2.26
HOXA9P31269 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.96□□□□□ -2.26
HOXA9P31269 RNU6-436P-201ENST00000516171 114 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 RNU6-1337P-201ENST00000516525 95 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 RNA5SP168-201ENST00000516642 112 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL512310.8-201ENST00000550183 120 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 CYP3A52P-201ENST00000563326 91 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 MIR5188-201ENST00000583467 113 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AC005176.2-201ENST00000596933 147 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL162424.1-201ENST00000602325 221 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL117336.2-201ENST00000602435 335 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 AL513423.1-201ENST00000621695 132 ntBASIC0.96□□□□□ -2.26
HOXA9P31269 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
HOXA9P31269 MIRLET7C-201ENST00000362160 84 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 SNORD114-26-201ENST00000363543 72 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 Y_RNA.265-201ENST00000364677 108 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 RNU6-424P-201ENST00000384367 105 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 SNORD116-13-201ENST00000384408 92 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 MIR628-201ENST00000385229 95 ntBASIC0.95□□□□□ -2.26
HOXA9P31269 MIR660-201ENST00000385235 97 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms