Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD3P31249 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.89□□□□□ -2.11
HOXD3P31249 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC1.89□□□□□ -2.11
HOXD3P31249 RNU7-99P-201ENST00000516271 62 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.89□□□□□ -2.11
HOXD3P31249 AC091178.2-201ENST00000584401 117 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 AC007229.1-201ENST00000590455 412 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD3P31249 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.89□□□□□ -2.11
HOXD3P31249 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
HOXD3P31249 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
HOXD3P31249 Y_RNA.182-201ENST00000363880 111 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU6-144P-201ENST00000383951 107 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU6-1080P-201ENST00000383982 107 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 Y_RNA.412-201ENST00000384001 104 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 SNORA8-201ENST00000384574 139 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU4-70P-201ENST00000384579 139 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AL359511.1-201ENST00000402970 211 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 HMGN2P3-201ENST00000433603 273 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXD3P31249 HMGN2P5-201ENST00000436882 273 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AL606517.2-201ENST00000442855 241 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AC233266.1-201ENST00000454518 96 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AC234781.5-201ENST00000508429 271 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 Y_RNA.662-201ENST00000516028 97 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU6-561P-201ENST00000516222 102 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU6-1291P-201ENST00000516591 104 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU1-142P-201ENST00000516682 145 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU7-116P-201ENST00000516940 62 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 RNU6-1096P-201ENST00000517089 102 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HOXD3P31249 AC011604.1-201ENST00000545978 196 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 MIR4724-201ENST00000579485 89 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 MIR4769-201ENST00000584126 77 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AL365434.2-201ENST00000607979 234 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AL353149.1-201ENST00000610667 244 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AC242852.1-201ENST00000612151 96 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AL359075.3-201ENST00000613288 217 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.88□□□□□ -2.11
HOXD3P31249 AC244015.1-201ENST00000622301 99 ntBASIC1.88□□□□□ -2.11
HOXD3P31249 Y_RNA.229-201ENST00000364347 113 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 Y_RNA.240-201ENST00000364469 95 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 Y_RNA.267-201ENST00000364679 109 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 RNU6-1062P-201ENST00000383908 107 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 Y_RNA.435-201ENST00000384095 112 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 SNORA72-201ENST00000384339 132 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR526A2-201ENST00000390198 65 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 SNORA40.19-201ENST00000390846 128 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 RNA5SP323-201ENST00000391094 133 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR1283-2-201ENST00000408621 87 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 AC010154.1-201ENST00000425857 269 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 SUMO1P3-201ENST00000439961 304 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXD3P31249 RNU6-437P-201ENST00000459408 95 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 RNU6-1007P-201ENST00000516586 107 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 IGLV3-17-201ENST00000519099 244 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR5694-201ENST00000581190 76 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR3670-2-201ENST00000582974 65 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR3670-1-201ENST00000584160 65 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR3670-3-201ENST00000584855 65 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 AC104465.1-201ENST00000611365 139 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 MIR3670-4-201ENST00000612260 65 ntBASIC1.87□□□□□ -2.11
HOXD3P31249 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXD3P31249 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD3P31249 MIR367-201ENST00000362299 68 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 DEFA7P-201ENST00000382676 285 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 MIR518A2-201ENST00000384966 87 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 HMGN2P39-201ENST00000398005 273 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 Y_RNA.621-201ENST00000411065 96 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RNU6-1135P-201ENST00000411083 103 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RNU5E-9P-201ENST00000411164 104 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RN7SKP192-201ENST00000411291 327 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXD3P31249 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD3P31249 RPS15AP28-201ENST00000435088 386 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 MTND2P29-201ENST00000438595 412 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RPS12P2-201ENST00000439728 269 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 snoU13.15-201ENST00000459407 104 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RNA5SP281-201ENST00000516504 135 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RNA5SP137-201ENST00000516833 135 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 RNU6-255P-201ENST00000516957 105 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 AC121758.2-201ENST00000553271 193 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD3P31249 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD3P31249 AC108706.1-201ENST00000611053 297 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 MIR6079-201ENST00000635807 62 ntBASIC1.86□□□□□ -2.11
HOXD3P31249 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD3P31249 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXD3P31249 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.85□□□□□ -2.11
HOXD3P31249 Y_RNA.8-201ENST00000362353 102 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 RNU6-774P-201ENST00000363238 107 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 RNU4-41P-201ENST00000364426 143 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 RNU6-804P-201ENST00000384286 107 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 MIR29C-201ENST00000385231 88 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HOXD3P31249 RN7SKP223-201ENST00000410582 62 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 CST2P1-201ENST00000425770 87 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 Y_RNA.797-201ENST00000515977 94 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 RNU6-237P-201ENST00000515985 71 ntBASIC1.85□□□□□ -2.11
HOXD3P31249 RNVU1-2-201ENST00000516326 135 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms