Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL591806.2-201ENST00000433122 173 ntBASIC1.67□□□□□ -2.14
MSH3P20585 RPS20P10-201ENST00000451209 253 ntBASIC1.67□□□□□ -2.14
MSH3P20585 RNA5SP57-201ENST00000459463 123 ntBASIC1.67□□□□□ -2.14
MSH3P20585 RPL36AP21-201ENST00000490372 323 ntBASIC1.67□□□□□ -2.14
MSH3P20585 RNU6-1278P-201ENST00000516130 107 ntBASIC1.67□□□□□ -2.14
MSH3P20585 AC136628.3-201ENST00000521868 290 ntBASIC1.67□□□□□ -2.14
MSH3P20585 AC073413.2-201ENST00000604332 360 ntBASIC1.67□□□□□ -2.14
MSH3P20585 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.67□□□□□ -2.14
MSH3P20585 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.66□□□□□ -2.14
MSH3P20585 SNORA25.1-201ENST00000362326 128 ntBASIC1.66□□□□□ -2.14
MSH3P20585 RNU6-112P-201ENST00000363599 104 ntBASIC1.66□□□□□ -2.14
MSH3P20585 RNU6-702P-201ENST00000364982 107 ntBASIC1.66□□□□□ -2.14
MSH3P20585 Y_RNA.341-201ENST00000365341 102 ntBASIC1.66□□□□□ -2.14
MSH3P20585 Y_RNA.456-201ENST00000384232 111 ntBASIC1.66□□□□□ -2.14
MSH3P20585 Y_RNA.562-201ENST00000384695 113 ntBASIC1.66□□□□□ -2.14
MSH3P20585 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 RNA5SP100-201ENST00000410903 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 RNA5SP59-201ENST00000410922 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AC009310.1-201ENST00000414414 451 ntBASIC1.66□□□□□ -2.14
MSH3P20585 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.66□□□□□ -2.14
MSH3P20585 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.66□□□□□ -2.14
MSH3P20585 SNORA27.4-201ENST00000516650 95 ntBASIC1.66□□□□□ -2.14
MSH3P20585 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AC015720.1-201ENST00000565251 277 ntBASIC1.66□□□□□ -2.14
MSH3P20585 MIR4713-201ENST00000582691 75 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AC104984.5-201ENST00000586878 94 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AC012433.1-201ENST00000588916 398 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AL512605.2-201ENST00000592972 256 ntBASIC1.66□□□□□ -2.14
MSH3P20585 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.66□□□□□ -2.14
MSH3P20585 AC004832.4-201ENST00000608952 331 ntBASIC1.66□□□□□ -2.14
MSH3P20585 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 MIR6715A-201ENST00000615929 79 ntBASIC1.66□□□□□ -2.14
MSH3P20585 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.66□□□□□ -2.14
MSH3P20585 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
MSH3P20585 RNU6-801P-201ENST00000364087 105 ntBASIC1.65□□□□□ -2.15
MSH3P20585 SNORA63D-201ENST00000364359 132 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU6-514P-201ENST00000384208 107 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU6-296P-201ENST00000384608 107 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU6-136P-201ENST00000384663 107 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU6-376P-201ENST00000384731 106 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU2-38P-201ENST00000410856 79 ntBASIC1.65□□□□□ -2.15
MSH3P20585 AL162725.1-201ENST00000435405 301 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RPS27P1-201ENST00000450552 247 ntBASIC1.65□□□□□ -2.15
MSH3P20585 RNU6-1132P-201ENST00000459214 107 ntBASIC1.65□□□□□ -2.15
MSH3P20585 AC004817.2-201ENST00000561794 651 ntBASIC1.65□□□□□ -2.15
MSH3P20585 DEFB122-202ENST00000569013 197 ntBASIC1.65□□□□□ -2.15
MSH3P20585 AC062037.2-201ENST00000610137 73 ntBASIC1.65□□□□□ -2.15
MSH3P20585 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.65□□□□□ -2.15
MSH3P20585 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.15
MSH3P20585 AC018630.2-201ENST00000534866 2403 ntBASIC1.64□□□□□ -2.15
MSH3P20585 UBE2WP1-201ENST00000362030 340 ntBASIC1.64□□□□□ -2.15
MSH3P20585 Y_RNA.14-201ENST00000362415 103 ntBASIC1.64□□□□□ -2.15
MSH3P20585 AC069257.2-201ENST00000441819 155 ntBASIC1.64□□□□□ -2.15
MSH3P20585 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.64□□□□□ -2.15
MSH3P20585 AC091178.2-201ENST00000584401 117 ntBASIC1.64□□□□□ -2.15
MSH3P20585 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH3P20585 AC022217.4-201ENST00000604389 163 ntBASIC1.64□□□□□ -2.15
MSH3P20585 AC010900.2-201ENST00000604508 210 ntBASIC1.64□□□□□ -2.15
MSH3P20585 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.64□□□□□ -2.15
MSH3P20585 U2.14-201ENST00000615943 113 ntBASIC1.64□□□□□ -2.15
MSH3P20585 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
MSH3P20585 WWP1P1-201ENST00000466609 2769 ntBASIC1.63□□□□□ -2.15
MSH3P20585 Y_RNA.44-201ENST00000362676 108 ntBASIC1.63□□□□□ -2.15
MSH3P20585 Y_RNA.217-201ENST00000364214 105 ntBASIC1.63□□□□□ -2.15
MSH3P20585 RNA5SP363-201ENST00000365072 115 ntBASIC1.63□□□□□ -2.15
MSH3P20585 RNU6-662P-201ENST00000384253 104 ntBASIC1.63□□□□□ -2.15
MSH3P20585 MIR520A-201ENST00000384862 85 ntBASIC1.63□□□□□ -2.15
MSH3P20585 RNA5SP109-201ENST00000391010 116 ntBASIC1.63□□□□□ -2.15
MSH3P20585 SNORA26.5-201ENST00000391215 123 ntBASIC1.63□□□□□ -2.15
MSH3P20585 RNU11-5P-201ENST00000391216 129 ntBASIC1.63□□□□□ -2.15
MSH3P20585 AL606517.2-201ENST00000442855 241 ntBASIC1.63□□□□□ -2.15
MSH3P20585 Y_RNA.641-201ENST00000459414 105 ntBASIC1.63□□□□□ -2.15
MSH3P20585 Y_RNA.637-201ENST00000459424 114 ntBASIC1.63□□□□□ -2.15
MSH3P20585 RNU7-94P-201ENST00000459576 63 ntBASIC1.63□□□□□ -2.15
MSH3P20585 AC091021.1-201ENST00000468051 388 ntBASIC1.63□□□□□ -2.15
MSH3P20585 MIR3683-201ENST00000580847 82 ntBASIC1.63□□□□□ -2.15
MSH3P20585 AC005972.2-201ENST00000604690 348 ntBASIC1.63□□□□□ -2.15
MSH3P20585 AC103810.8-201ENST00000607347 118 ntBASIC1.63□□□□□ -2.15
MSH3P20585 AL078604.3-201ENST00000615580 211 ntBASIC1.63□□□□□ -2.15
MSH3P20585 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.63□□□□□ -2.15
MSH3P20585 MIR6079-201ENST00000635807 62 ntBASIC1.63□□□□□ -2.15
MSH3P20585 Y_RNA.275-201ENST00000364726 110 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNA5SP190-201ENST00000365222 118 ntBASIC1.62□□□□□ -2.15
MSH3P20585 Y_RNA.352-201ENST00000365439 102 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNU6-1323P-201ENST00000384025 107 ntBASIC1.62□□□□□ -2.15
MSH3P20585 SNORA72.4-201ENST00000384174 132 ntBASIC1.62□□□□□ -2.15
MSH3P20585 MIR764-201ENST00000390811 85 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNU6-763P-201ENST00000390865 106 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNU2-14P-201ENST00000411053 191 ntBASIC1.62□□□□□ -2.15
MSH3P20585 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.62□□□□□ -2.15
MSH3P20585 AC104332.1-201ENST00000440471 797 ntBASIC1.62□□□□□ -2.15
MSH3P20585 snoU13.23-201ENST00000458863 104 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RPL39P38-201ENST00000467018 153 ntBASIC1.62□□□□□ -2.15
MSH3P20585 AC108210.2-201ENST00000503681 201 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNU6-341P-201ENST00000516973 96 ntBASIC1.62□□□□□ -2.15
MSH3P20585 RNA5SP437-201ENST00000517249 129 ntBASIC1.62□□□□□ -2.15
MSH3P20585 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.62□□□□□ -2.15
MSH3P20585 MIR4255-201ENST00000579351 72 ntBASIC1.62□□□□□ -2.15
MSH3P20585 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
MSH3P20585 RNU6-1272P-201ENST00000362776 107 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms