Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RN7SKP295-201ENST00000517264 153 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.05□□□□□ -2.24
SDC1P18827 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.05□□□□□ -2.24
SDC1P18827 AP000942.3-201ENST00000603702 160 ntBASIC1.05□□□□□ -2.24
SDC1P18827 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AL157834.3-201ENST00000615543 103 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AC010205.1-201ENST00000616668 449 ntBASIC1.05□□□□□ -2.24
SDC1P18827 MIR8065-201ENST00000620577 100 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AL606534.2-204ENST00000635008 178 ntBASIC1.05□□□□□ -2.24
SDC1P18827 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
SDC1P18827 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SDC1P18827 Y_RNA.329-201ENST00000365209 107 ntBASIC1.04□□□□□ -2.24
SDC1P18827 Y_RNA.458-201ENST00000384240 102 ntBASIC1.04□□□□□ -2.24
SDC1P18827 RNY1P14-201ENST00000384426 108 ntBASIC1.04□□□□□ -2.24
SDC1P18827 MIR618-201ENST00000385287 98 ntBASIC1.04□□□□□ -2.24
SDC1P18827 BTF3P4-201ENST00000418852 495 ntBASIC1.04□□□□□ -2.24
SDC1P18827 MTND1P14-201ENST00000427400 950 ntBASIC1.04□□□□□ -2.24
SDC1P18827 AL160004.2-201ENST00000432935 350 ntBASIC1.04□□□□□ -2.24
SDC1P18827 SNORA40.14-201ENST00000516543 86 ntBASIC1.04□□□□□ -2.24
SDC1P18827 AC090049.2-201ENST00000550377 109 ntBASIC1.04□□□□□ -2.24
SDC1P18827 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.04□□□□□ -2.24
SDC1P18827 AL591926.4-201ENST00000616895 298 ntBASIC1.04□□□□□ -2.24
SDC1P18827 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.04□□□□□ -2.24
SDC1P18827 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SDC1P18827 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.03□□□□□ -2.24
SDC1P18827 MT-TD-201ENST00000387419 68 ntBASIC1.03□□□□□ -2.24
SDC1P18827 Y_RNA.621-201ENST00000411065 96 ntBASIC1.03□□□□□ -2.24
SDC1P18827 MCFD2P1-201ENST00000417812 300 ntBASIC1.03□□□□□ -2.24
SDC1P18827 AC104332.1-201ENST00000440471 797 ntBASIC1.03□□□□□ -2.24
SDC1P18827 SNORA25.10-201ENST00000515926 124 ntBASIC1.03□□□□□ -2.24
SDC1P18827 AC011604.1-201ENST00000545978 196 ntBASIC1.03□□□□□ -2.24
SDC1P18827 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.03□□□□□ -2.24
SDC1P18827 GHRLOS.1-201ENST00000610995 70 ntBASIC1.03□□□□□ -2.24
SDC1P18827 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.03□□□□□ -2.24
SDC1P18827 AL138825.1-201ENST00000618587 192 ntBASIC1.03□□□□□ -2.24
SDC1P18827 SNORD68-201ENST00000363214 84 ntBASIC1.02□□□□□ -2.25
SDC1P18827 Y_RNA.197-201ENST00000364004 102 ntBASIC1.02□□□□□ -2.25
SDC1P18827 SNORA2.2-201ENST00000365473 135 ntBASIC1.02□□□□□ -2.25
SDC1P18827 MIR526A1-201ENST00000384897 85 ntBASIC1.02□□□□□ -2.25
SDC1P18827 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC1P18827 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
SDC1P18827 RPS20P10-201ENST00000451209 253 ntBASIC1.02□□□□□ -2.25
SDC1P18827 AC005042.3-201ENST00000453230 174 ntBASIC1.02□□□□□ -2.25
SDC1P18827 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC1P18827 AC120024.3-201ENST00000603167 156 ntBASIC1.02□□□□□ -2.25
SDC1P18827 AL080274.1-201ENST00000605565 220 ntBASIC1.02□□□□□ -2.25
SDC1P18827 AL121655.1-201ENST00000605811 308 ntBASIC1.02□□□□□ -2.25
SDC1P18827 AL133255.1-201ENST00000606374 441 ntBASIC1.02□□□□□ -2.25
SDC1P18827 Y_RNA.772-201ENST00000606692 102 ntBASIC1.02□□□□□ -2.25
SDC1P18827 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.02□□□□□ -2.25
SDC1P18827 AL451046.2-201ENST00000403074 277 ntBASIC1.01□□□□□ -2.25
SDC1P18827 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.01□□□□□ -2.25
SDC1P18827 PIGPP3-201ENST00000425307 415 ntBASIC1.01□□□□□ -2.25
SDC1P18827 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.01□□□□□ -2.25
SDC1P18827 CYCTP-201ENST00000504253 315 ntBASIC1.01□□□□□ -2.25
SDC1P18827 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.01□□□□□ -2.25
SDC1P18827 AP001094.1-201ENST00000579805 193 ntBASIC1.01□□□□□ -2.25
SDC1P18827 MIR3124-201ENST00000582636 67 ntBASIC1.01□□□□□ -2.25
SDC1P18827 RPS29P30-201ENST00000600975 111 ntBASIC1.01□□□□□ -2.25
SDC1P18827 AC006157.1-201ENST00000611750 366 ntBASIC1.01□□□□□ -2.25
SDC1P18827 AC007485.1-201ENST00000616755 206 ntBASIC1.01□□□□□ -2.25
SDC1P18827 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1□□□□□ -2.25
SDC1P18827 SNORD81.1-201ENST00000363064 77 ntBASIC1□□□□□ -2.25
SDC1P18827 Y_RNA.112-201ENST00000363250 102 ntBASIC1□□□□□ -2.25
SDC1P18827 RNU6-833P-201ENST00000363486 107 ntBASIC1□□□□□ -2.25
SDC1P18827 U8.5-201ENST00000364528 136 ntBASIC1□□□□□ -2.25
SDC1P18827 SNORA25.8-201ENST00000364831 128 ntBASIC1□□□□□ -2.25
SDC1P18827 Y_RNA.331-201ENST00000365267 102 ntBASIC1□□□□□ -2.25
SDC1P18827 Y_RNA.462-201ENST00000384268 102 ntBASIC1□□□□□ -2.25
SDC1P18827 MIR891A-201ENST00000401237 79 ntBASIC1□□□□□ -2.25
SDC1P18827 RNU6-855P-201ENST00000410395 104 ntBASIC1□□□□□ -2.25
SDC1P18827 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1□□□□□ -2.25
SDC1P18827 AC048334.1-201ENST00000477975 159 ntBASIC1□□□□□ -2.25
SDC1P18827 RNU6-322P-201ENST00000516010 103 ntBASIC1□□□□□ -2.25
SDC1P18827 SNORA31.2-201ENST00000516019 134 ntBASIC1□□□□□ -2.25
SDC1P18827 MIR4762-201ENST00000585261 75 ntBASIC1□□□□□ -2.25
SDC1P18827 DEFB117-201ENST00000602356 141 ntBASIC1□□□□□ -2.25
SDC1P18827 AC005972.2-201ENST00000604690 348 ntBASIC1□□□□□ -2.25
SDC1P18827 SNORD114-21-201ENST00000606412 72 ntBASIC1□□□□□ -2.25
SDC1P18827 uc_338.22-201ENST00000622722 187 ntBASIC1□□□□□ -2.25
SDC1P18827 AL008636.1-201ENST00000625038 1018 ntBASIC1□□□□□ -2.25
SDC1P18827 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1□□□□□ -2.25
SDC1P18827 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.99□□□□□ -2.25
SDC1P18827 AL391987.6-201ENST00000305671 199 ntBASIC0.99□□□□□ -2.25
SDC1P18827 Y_RNA.253-201ENST00000364562 112 ntBASIC0.99□□□□□ -2.25
SDC1P18827 Y_RNA.419-201ENST00000384041 102 ntBASIC0.99□□□□□ -2.25
SDC1P18827 RNU6-163P-201ENST00000384396 106 ntBASIC0.99□□□□□ -2.25
SDC1P18827 RNU6-1105P-201ENST00000384774 107 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AL590004.1-201ENST00000405321 300 ntBASIC0.99□□□□□ -2.25
SDC1P18827 RNU6-130P-201ENST00000411112 103 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AL390729.2-201ENST00000416137 156 ntBASIC0.99□□□□□ -2.25
SDC1P18827 MTND4LP11-201ENST00000422184 280 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AC010655.3-201ENST00000478818 450 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AC114811.1-201ENST00000507207 168 ntBASIC0.99□□□□□ -2.25
SDC1P18827 RNU7-110P-201ENST00000516891 62 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AL022345.2-201ENST00000606307 135 ntBASIC0.99□□□□□ -2.25
SDC1P18827 PART1_1.1-201ENST00000611761 217 ntBASIC0.99□□□□□ -2.25
SDC1P18827 AC027279.3-201ENST00000625055 122 ntBASIC0.99□□□□□ -2.25
SDC1P18827 Y_RNA.310-201ENST00000365063 113 ntBASIC0.98□□□□□ -2.25
SDC1P18827 Y_RNA.395-201ENST00000383945 109 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms