Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RBMX2P4-201ENST00000441256 376 ntBASIC1.27□□□□□ -2.21
SIX3O95343 DYNLT3P2-201ENST00000442517 295 ntBASIC1.27□□□□□ -2.21
SIX3O95343 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.27□□□□□ -2.21
SIX3O95343 AC093850.1-201ENST00000454121 251 ntBASIC1.27□□□□□ -2.21
SIX3O95343 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.27□□□□□ -2.21
SIX3O95343 ELOCP24-201ENST00000456370 334 ntBASIC1.27□□□□□ -2.21
SIX3O95343 AC004223.1-201ENST00000479840 271 ntBASIC1.27□□□□□ -2.21
SIX3O95343 RNU6-155P-201ENST00000516347 100 ntBASIC1.27□□□□□ -2.21
SIX3O95343 RNU1-92P-201ENST00000517017 135 ntBASIC1.27□□□□□ -2.21
SIX3O95343 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SIX3O95343 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.26□□□□□ -2.21
SIX3O95343 ZNF209P-201ENST00000593450 2304 ntBASIC1.26□□□□□ -2.21
SIX3O95343 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
SIX3O95343 Y_RNA.471-201ENST00000384312 102 ntBASIC1.26□□□□□ -2.21
SIX3O95343 RNU6-424P-201ENST00000384367 105 ntBASIC1.26□□□□□ -2.21
SIX3O95343 RNY3P4-201ENST00000384428 101 ntBASIC1.26□□□□□ -2.21
SIX3O95343 RNU6-939P-201ENST00000384634 107 ntBASIC1.26□□□□□ -2.21
SIX3O95343 RNU6-955P-201ENST00000410497 104 ntBASIC1.26□□□□□ -2.21
SIX3O95343 RPL39P39-201ENST00000455840 151 ntBASIC1.26□□□□□ -2.21
SIX3O95343 MIR1273G-201ENST00000577677 100 ntBASIC1.26□□□□□ -2.21
SIX3O95343 MIR4659A-201ENST00000580269 81 ntBASIC1.26□□□□□ -2.21
SIX3O95343 AC091178.2-201ENST00000584401 117 ntBASIC1.26□□□□□ -2.21
SIX3O95343 GHRLOS.1-201ENST00000610995 70 ntBASIC1.26□□□□□ -2.21
SIX3O95343 AC011476.5-201ENST00000615594 130 ntBASIC1.26□□□□□ -2.21
SIX3O95343 MIR6086-201ENST00000638065 55 ntBASIC1.26□□□□□ -2.21
SIX3O95343 SNORD68-201ENST00000363214 84 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNU6-626P-201ENST00000363354 107 ntBASIC1.25□□□□□ -2.21
SIX3O95343 Y_RNA.390-201ENST00000383932 102 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNU6-20P-201ENST00000384106 107 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNU6-163P-201ENST00000384396 106 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNU6-35P-201ENST00000384530 107 ntBASIC1.25□□□□□ -2.21
SIX3O95343 MIR150-201ENST00000385048 84 ntBASIC1.25□□□□□ -2.21
SIX3O95343 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.25□□□□□ -2.21
SIX3O95343 Y_RNA.661-201ENST00000516003 99 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNA5SP121-201ENST00000516537 101 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RNU6-699P-201ENST00000517081 110 ntBASIC1.25□□□□□ -2.21
SIX3O95343 SNORD116.3-201ENST00000517176 78 ntBASIC1.25□□□□□ -2.21
SIX3O95343 AC090821.2-201ENST00000523552 176 ntBASIC1.25□□□□□ -2.21
SIX3O95343 AC006600.1-201ENST00000572529 153 ntBASIC1.25□□□□□ -2.21
SIX3O95343 RBM11P1-201ENST00000604951 799 ntBASIC1.25□□□□□ -2.21
SIX3O95343 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.25□□□□□ -2.21
SIX3O95343 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SIX3O95343 SNORD114-7-201ENST00000362520 77 ntBASIC1.24□□□□□ -2.21
SIX3O95343 Y_RNA.85-201ENST00000363014 111 ntBASIC1.24□□□□□ -2.21
SIX3O95343 SNORD115-30-201ENST00000364117 82 ntBASIC1.24□□□□□ -2.21
SIX3O95343 Y_RNA.356-201ENST00000365475 113 ntBASIC1.24□□□□□ -2.21
SIX3O95343 RNU6-1040P-201ENST00000383974 107 ntBASIC1.24□□□□□ -2.21
SIX3O95343 SNORA12.1-201ENST00000390873 148 ntBASIC1.24□□□□□ -2.21
SIX3O95343 AL031003.1-201ENST00000404229 172 ntBASIC1.24□□□□□ -2.21
SIX3O95343 AC104332.1-201ENST00000440471 797 ntBASIC1.24□□□□□ -2.21
SIX3O95343 OR9P1P-201ENST00000496431 281 ntBASIC1.24□□□□□ -2.21
SIX3O95343 RNU6-1337P-201ENST00000516525 95 ntBASIC1.24□□□□□ -2.21
SIX3O95343 AC005828.6-201ENST00000606610 232 ntBASIC1.24□□□□□ -2.21
SIX3O95343 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
SIX3O95343 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SIX3O95343 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
SIX3O95343 RNU2-54P-201ENST00000410299 190 ntBASIC1.23□□□□□ -2.21
SIX3O95343 RNA5SP511-201ENST00000410487 115 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AL354751.2-201ENST00000415471 210 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.23□□□□□ -2.21
SIX3O95343 AC236972.2-201ENST00000434979 310 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.23□□□□□ -2.21
SIX3O95343 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.23□□□□□ -2.21
SIX3O95343 Y_RNA.718-201ENST00000517110 102 ntBASIC1.23□□□□□ -2.21
SIX3O95343 RNU2-12P-201ENST00000517216 168 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AL358944.1-201ENST00000528537 144 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AL355375.2-201ENST00000574825 175 ntBASIC1.23□□□□□ -2.21
SIX3O95343 VN1R91P-201ENST00000594377 169 ntBASIC1.23□□□□□ -2.21
SIX3O95343 AL357312.1-201ENST00000603879 298 ntBASIC1.23□□□□□ -2.21
SIX3O95343 RNU6-117P-201ENST00000365415 107 ntBASIC1.22□□□□□ -2.21
SIX3O95343 SNORA2.2-201ENST00000365473 135 ntBASIC1.22□□□□□ -2.21
SIX3O95343 RNU6-1009P-201ENST00000390996 107 ntBASIC1.22□□□□□ -2.21
SIX3O95343 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
SIX3O95343 MIR891A-201ENST00000401237 79 ntBASIC1.22□□□□□ -2.21
SIX3O95343 RPEP5-201ENST00000441137 268 ntBASIC1.22□□□□□ -2.21
SIX3O95343 RNU6-911P-201ENST00000516523 104 ntBASIC1.22□□□□□ -2.21
SIX3O95343 SNORA70.22-201ENST00000517160 124 ntBASIC1.22□□□□□ -2.21
SIX3O95343 AC090049.2-201ENST00000550377 109 ntBASIC1.22□□□□□ -2.21
SIX3O95343 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.22□□□□□ -2.21
SIX3O95343 MIR3660-201ENST00000584845 100 ntBASIC1.22□□□□□ -2.21
SIX3O95343 BX284668.6-201ENST00000606899 438 ntBASIC1.22□□□□□ -2.21
SIX3O95343 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.21□□□□□ -2.22
SIX3O95343 Y_RNA.101-201ENST00000363154 102 ntBASIC1.21□□□□□ -2.22
SIX3O95343 Y_RNA.146-201ENST00000363549 102 ntBASIC1.21□□□□□ -2.22
SIX3O95343 Y_RNA.294-201ENST00000364916 102 ntBASIC1.21□□□□□ -2.22
SIX3O95343 RNU6-1080P-201ENST00000383982 107 ntBASIC1.21□□□□□ -2.22
SIX3O95343 RNU5A-5P-201ENST00000411054 116 ntBASIC1.21□□□□□ -2.22
SIX3O95343 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.21□□□□□ -2.22
SIX3O95343 AC015922.2-201ENST00000435593 184 ntBASIC1.21□□□□□ -2.22
SIX3O95343 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.21□□□□□ -2.22
SIX3O95343 SNORA31.4-201ENST00000516049 129 ntBASIC1.21□□□□□ -2.22
SIX3O95343 RNU6-277P-201ENST00000516272 106 ntBASIC1.21□□□□□ -2.22
SIX3O95343 RPS29P30-201ENST00000600975 111 ntBASIC1.21□□□□□ -2.22
SIX3O95343 AL132765.2-201ENST00000610812 351 ntBASIC1.21□□□□□ -2.22
SIX3O95343 Y_RNA.27-201ENST00000362540 103 ntBASIC1.2□□□□□ -2.22
SIX3O95343 Y_RNA.446-201ENST00000384178 104 ntBASIC1.2□□□□□ -2.22
SIX3O95343 SNORA25-201ENST00000384384 134 ntBASIC1.2□□□□□ -2.22
SIX3O95343 MIR559-201ENST00000385188 96 ntBASIC1.2□□□□□ -2.22
SIX3O95343 MIR618-201ENST00000385287 98 ntBASIC1.2□□□□□ -2.22
SIX3O95343 MLLT10P1-201ENST00000418346 262 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms