Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MTND5P20-201ENST00000448677 143 ntBASIC1.1□□□□□ -2.23
SDC3O75056 CHEK2P4-201ENST00000450340 246 ntBASIC1.1□□□□□ -2.23
SDC3O75056 RNU6-1291P-201ENST00000516591 104 ntBASIC1.1□□□□□ -2.23
SDC3O75056 MIR4659A-201ENST00000580269 81 ntBASIC1.1□□□□□ -2.23
SDC3O75056 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.1□□□□□ -2.23
SDC3O75056 AC084781.2-201ENST00000615568 161 ntBASIC1.1□□□□□ -2.23
SDC3O75056 MIRLET7C-201ENST00000362160 84 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RNU6-1115P-201ENST00000362490 106 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RNU6-626P-201ENST00000363354 107 ntBASIC1.09□□□□□ -2.23
SDC3O75056 Y_RNA.428-201ENST00000384078 102 ntBASIC1.09□□□□□ -2.23
SDC3O75056 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.09□□□□□ -2.23
SDC3O75056 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.09□□□□□ -2.23
SDC3O75056 AL049830.1-201ENST00000468034 425 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RNU6-1337P-201ENST00000516525 95 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RNU6-63P-201ENST00000516690 95 ntBASIC1.09□□□□□ -2.23
SDC3O75056 RNU6-165P-201ENST00000517170 99 ntBASIC1.09□□□□□ -2.23
SDC3O75056 SNORD116.3-201ENST00000517176 78 ntBASIC1.09□□□□□ -2.23
SDC3O75056 AC090049.2-201ENST00000550377 109 ntBASIC1.09□□□□□ -2.23
SDC3O75056 AC106754.2-201ENST00000623006 233 ntBASIC1.09□□□□□ -2.23
SDC3O75056 MIR4272-201ENST00000635924 64 ntBASIC1.09□□□□□ -2.23
SDC3O75056 U6.92-201ENST00000636464 89 ntBASIC1.09□□□□□ -2.23
SDC3O75056 AC005592.1-201ENST00000566527 1640 ntBASIC1.08□□□□□ -2.24
SDC3O75056 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SDC3O75056 RNY1-201ENST00000364228 113 ntBASIC1.08□□□□□ -2.24
SDC3O75056 MIR222-201ENST00000384992 110 ntBASIC1.08□□□□□ -2.24
SDC3O75056 RNA5SP511-201ENST00000410487 115 ntBASIC1.08□□□□□ -2.24
SDC3O75056 RNU2-61P-201ENST00000411069 191 ntBASIC1.08□□□□□ -2.24
SDC3O75056 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.08□□□□□ -2.24
SDC3O75056 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.08□□□□□ -2.24
SDC3O75056 MIR4778-201ENST00000577635 80 ntBASIC1.08□□□□□ -2.24
SDC3O75056 MIR548S-201ENST00000581352 82 ntBASIC1.08□□□□□ -2.24
SDC3O75056 GHRLOS.1-201ENST00000610995 70 ntBASIC1.08□□□□□ -2.24
SDC3O75056 AC010205.1-201ENST00000616668 449 ntBASIC1.08□□□□□ -2.24
SDC3O75056 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SDC3O75056 Y_RNA.146-201ENST00000363549 102 ntBASIC1.07□□□□□ -2.24
SDC3O75056 RNU1-115P-201ENST00000365329 160 ntBASIC1.07□□□□□ -2.24
SDC3O75056 SNORA2.2-201ENST00000365473 135 ntBASIC1.07□□□□□ -2.24
SDC3O75056 Y_RNA.446-201ENST00000384178 104 ntBASIC1.07□□□□□ -2.24
SDC3O75056 Y_RNA.466-201ENST00000384294 113 ntBASIC1.07□□□□□ -2.24
SDC3O75056 SNORA25-201ENST00000384384 134 ntBASIC1.07□□□□□ -2.24
SDC3O75056 Y_RNA.529-201ENST00000384586 119 ntBASIC1.07□□□□□ -2.24
SDC3O75056 MIR1285-1-201ENST00000408593 84 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AL354751.2-201ENST00000415471 210 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AF228730.4-201ENST00000421457 183 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AC236972.2-201ENST00000434979 310 ntBASIC1.07□□□□□ -2.24
SDC3O75056 Z98949.2-201ENST00000440996 144 ntBASIC1.07□□□□□ -2.24
SDC3O75056 RNU6-922P-201ENST00000516753 99 ntBASIC1.07□□□□□ -2.24
SDC3O75056 Y_RNA.702-201ENST00000516843 96 ntBASIC1.07□□□□□ -2.24
SDC3O75056 RNA5SP404-201ENST00000517118 132 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.07□□□□□ -2.24
SDC3O75056 AC006600.1-201ENST00000572529 153 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AC022441.3-201ENST00000605737 136 ntBASIC1.07□□□□□ -2.24
SDC3O75056 BX284668.6-201ENST00000606899 438 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AC011476.5-201ENST00000615594 130 ntBASIC1.07□□□□□ -2.24
SDC3O75056 AL138825.1-201ENST00000618587 192 ntBASIC1.07□□□□□ -2.24
SDC3O75056 RNU4-41P-201ENST00000364426 143 ntBASIC1.06□□□□□ -2.24
SDC3O75056 Y_RNA.252-201ENST00000364556 101 ntBASIC1.06□□□□□ -2.24
SDC3O75056 RNU6-708P-201ENST00000384217 107 ntBASIC1.06□□□□□ -2.24
SDC3O75056 Y_RNA.496-201ENST00000384444 101 ntBASIC1.06□□□□□ -2.24
SDC3O75056 RNU6-136P-201ENST00000384663 107 ntBASIC1.06□□□□□ -2.24
SDC3O75056 SNORD41-201ENST00000386967 70 ntBASIC1.06□□□□□ -2.24
SDC3O75056 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.06□□□□□ -2.24
SDC3O75056 AC096644.2-201ENST00000429278 159 ntBASIC1.06□□□□□ -2.24
SDC3O75056 DYNLT3P2-201ENST00000442517 295 ntBASIC1.06□□□□□ -2.24
SDC3O75056 RPS4XP11-201ENST00000446897 772 ntBASIC1.06□□□□□ -2.24
SDC3O75056 AC233266.1-201ENST00000454518 96 ntBASIC1.06□□□□□ -2.24
SDC3O75056 RNU7-12P-201ENST00000516030 62 ntBASIC1.06□□□□□ -2.24
SDC3O75056 RNU6-436P-201ENST00000516171 114 ntBASIC1.06□□□□□ -2.24
SDC3O75056 MIR4423-201ENST00000580922 80 ntBASIC1.06□□□□□ -2.24
SDC3O75056 AL022345.2-201ENST00000606307 135 ntBASIC1.06□□□□□ -2.24
SDC3O75056 AC242852.1-201ENST00000612151 96 ntBASIC1.06□□□□□ -2.24
SDC3O75056 AC022709.1-201ENST00000615967 87 ntBASIC1.06□□□□□ -2.24
SDC3O75056 AC244015.1-201ENST00000622301 99 ntBASIC1.06□□□□□ -2.24
SDC3O75056 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.06□□□□□ -2.24
SDC3O75056 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
SDC3O75056 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.06□□□□□ -2.24
SDC3O75056 RNU6-833P-201ENST00000363486 107 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNY3P14-201ENST00000384309 102 ntBASIC1.05□□□□□ -2.24
SDC3O75056 MIR548J-201ENST00000408833 112 ntBASIC1.05□□□□□ -2.24
SDC3O75056 OR2A41P-201ENST00000473586 105 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNU6-322P-201ENST00000516010 103 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNU6-507P-201ENST00000516045 100 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNU6-917P-201ENST00000516294 104 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNU6-155P-201ENST00000516347 100 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RNU6-113P-201ENST00000516653 101 ntBASIC1.05□□□□□ -2.24
SDC3O75056 RN7SKP295-201ENST00000517264 153 ntBASIC1.05□□□□□ -2.24
SDC3O75056 AC022616.4-201ENST00000522985 181 ntBASIC1.05□□□□□ -2.24
SDC3O75056 MIR151B-201ENST00000584249 96 ntBASIC1.05□□□□□ -2.24
SDC3O75056 MIR6788-201ENST00000618842 66 ntBASIC1.05□□□□□ -2.24
SDC3O75056 MIR6515-201ENST00000619843 57 ntBASIC1.05□□□□□ -2.24
SDC3O75056 AC027279.3-201ENST00000625055 122 ntBASIC1.05□□□□□ -2.24
SDC3O75056 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.04□□□□□ -2.24
SDC3O75056 Y_RNA.356-201ENST00000365475 113 ntBASIC1.04□□□□□ -2.24
SDC3O75056 Y_RNA.462-201ENST00000384268 102 ntBASIC1.04□□□□□ -2.24
SDC3O75056 Y_RNA.570-201ENST00000384750 101 ntBASIC1.04□□□□□ -2.24
SDC3O75056 AL451046.2-201ENST00000403074 277 ntBASIC1.04□□□□□ -2.24
SDC3O75056 RNU6-1054P-201ENST00000411293 104 ntBASIC1.04□□□□□ -2.24
SDC3O75056 MRPL35P3-201ENST00000421557 364 ntBASIC1.04□□□□□ -2.24
SDC3O75056 AC093850.1-201ENST00000454121 251 ntBASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 174 ms