Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SNORA31.25-201ENST00000517242 134 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AL359075.3-201ENST00000613288 217 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 AC245884.12-201ENST00000615364 59 ntBASIC2.34□□□□□ -2.03
PCDHA1Q9Y5I3 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 AP006437.1-201ENST00000641440 3685 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.65-201ENST00000362846 100 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.76-201ENST00000362931 109 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.257-201ENST00000364596 102 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.269-201ENST00000364685 89 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-763P-201ENST00000390865 106 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 RNA5SP467-201ENST00000391274 118 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.590-201ENST00000410140 107 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-651P-201ENST00000411040 105 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 AL162725.1-201ENST00000435405 301 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 AC010409.1-201ENST00000487382 476 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 HMGB3P3-201ENST00000510526 400 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 RNU7-128P-201ENST00000517247 62 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 AC004832.4-201ENST00000608952 331 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 MIR6895-201ENST00000613497 78 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 AC078938.1-201ENST00000620993 318 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 MIR203B-201ENST00000636080 86 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 U6.108-201ENST00000637764 58 ntBASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
PCDHA1Q9Y5I3 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-1318P-201ENST00000365389 103 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-1323P-201ENST00000384025 107 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 SNORD116-13-201ENST00000384408 92 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 MIR144-201ENST00000384886 86 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 SNORA26.5-201ENST00000391215 123 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU11-5P-201ENST00000391216 129 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU2-14P-201ENST00000411053 191 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU1-142P-201ENST00000516682 145 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 IGLV3-17-201ENST00000519099 244 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 MIR5694-201ENST00000581190 76 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 MIR4524B-201ENST00000581569 115 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AC009779.6-201ENST00000603972 165 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AC005972.2-201ENST00000604690 348 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AL442067.1-201ENST00000613261 223 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 AC073349.3-201ENST00000617616 186 ntBASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-899P-201ENST00000363947 107 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-211P-201ENST00000384047 107 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.515-201ENST00000384535 112 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 RNA5SP511-201ENST00000410487 115 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.638-201ENST00000459374 113 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 COX6CP14-201ENST00000469580 174 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 RPS26P45-201ENST00000471748 340 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.679-201ENST00000516416 91 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-63P-201ENST00000516690 95 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 RNU7-193P-201ENST00000516723 65 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 AC015720.1-201ENST00000565251 277 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 AC011921.3-201ENST00000605540 361 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 AL008718.3-201ENST00000610217 321 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
PCDHA1Q9Y5I3 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 RNA5SP432-201ENST00000362480 116 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 Y_RNA.292-201ENST00000364904 97 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 RNY4P28-201ENST00000365281 93 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 MIR597-201ENST00000384968 97 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-1186P-201ENST00000410429 97 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 BTF3P11-201ENST00000426582 477 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 AL591806.2-201ENST00000433122 173 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 MTND2P29-201ENST00000438595 412 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 AC104332.1-201ENST00000440471 797 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 U8.19-201ENST00000459095 133 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 RNU7-116P-201ENST00000516940 62 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 AP005660.1-201ENST00000522972 293 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 AC121758.2-201ENST00000553271 193 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 MIR4529-201ENST00000578110 78 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 MIR5089-201ENST00000580047 84 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 AC013791.1-201ENST00000616619 62 ntBASIC2.3□□□□□ -2.04
PCDHA1Q9Y5I3 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 AL355497.1-201ENST00000406262 551 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 snoU13.23-201ENST00000458863 104 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 RNU7-115P-201ENST00000516433 55 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 DEFB122-202ENST00000569013 197 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 MIR5692C2-201ENST00000577959 77 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 AP003357.1-201ENST00000604497 148 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 AC068647.2-201ENST00000637380 353 ntBASIC2.29□□□□□ -2.04
PCDHA1Q9Y5I3 SNORA33-201ENST00000363664 130 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 U8.7-201ENST00000364940 136 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 RNU6-376P-201ENST00000384731 106 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 SNORA48.1-201ENST00000390879 135 ntBASIC2.28□□□□□ -2.04
PCDHA1Q9Y5I3 RNA5SP323-201ENST00000391094 133 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 144.3 ms