Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MIR1254-2-201ENST00000579553 63 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 RN7SL600P-201ENST00000581811 299 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 MIR6841-201ENST00000637129 72 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 MIR492-201ENST00000638676 116 ntBASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS9D1Q9Y2B5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNU4-32P-201ENST00000363404 141 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA25.6-201ENST00000364121 118 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-411P-201ENST00000384451 107 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNA5SP482-201ENST00000391269 118 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNU4-37P-201ENST00000410214 84 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 GOT2P5-201ENST00000433995 546 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 HMGN2P16-201ENST00000456802 261 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 RNU1-98P-201ENST00000458992 160 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 AC026726.1-201ENST00000512859 601 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA25.13-201ENST00000516395 103 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 IGLV3-17-201ENST00000519099 244 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 AC007224.1-201ENST00000564410 144 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 AC103810.6-201ENST00000606708 136 ntBASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS9D1Q9Y2B5 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 SNORA70C-201ENST00000384538 135 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-991P-201ENST00000516168 107 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 AL513043.2-201ENST00000573941 143 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 MIR3134-201ENST00000579433 74 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 uc_338.25-201ENST00000613756 156 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 ZYXP1-201ENST00000617638 118 ntBASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS9D1Q9Y2B5 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 RNA5SP399-201ENST00000364003 117 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-424P-201ENST00000384367 105 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 MIR548G-201ENST00000408442 89 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 AL357552.1-201ENST00000445254 415 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 RNU7-153P-201ENST00000516455 62 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 AL360157.1-201ENST00000565962 87 ntBASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
VPS9D1Q9Y2B5 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-1083P-201ENST00000384022 107 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 MIR767-201ENST00000390228 109 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 MIR1236-201ENST00000408340 102 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 MIR1267-201ENST00000408723 78 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-380P-201ENST00000410207 107 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RNA5SP261-201ENST00000410536 106 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 AL161788.1-201ENST00000441805 169 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 AL450471.1-201ENST00000447509 127 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RNU2-58P-201ENST00000516403 183 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 MIR4644-201ENST00000579929 84 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 AC020914.4-201ENST00000597690 277 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 RNU6-90P-201ENST00000606352 106 ntBASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
VPS9D1Q9Y2B5 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.9□□□□□ -1.78
VPS9D1Q9Y2B5 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
VPS9D1Q9Y2B5 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP130-201ENST00000364431 114 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP97-201ENST00000365006 84 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 MIR34C-201ENST00000384831 77 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 SNORA57.1-201ENST00000391227 145 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP317-201ENST00000410176 116 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RN7SKP111-201ENST00000410349 271 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP38-201ENST00000410750 119 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP311-201ENST00000411290 116 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 AL356095.1-201ENST00000417217 199 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP315-201ENST00000516340 116 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP164-201ENST00000516533 110 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP312-201ENST00000517068 116 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 RNA5SP179-201ENST00000517284 121 ntBASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
VPS9D1Q9Y2B5 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.89□□□□□ -1.79
VPS9D1Q9Y2B5 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
VPS9D1Q9Y2B5 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms