Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNU6-1154P-201ENST00000391001 104 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 Y_RNA.622-201ENST00000411091 108 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 AC008267.6-201ENST00000441664 139 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 RPS4XP11-201ENST00000446897 772 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 snoU13.23-201ENST00000458863 104 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 RNU6-126P-201ENST00000516685 103 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 RNU6-667P-201ENST00000517186 102 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 MIR378D2-201ENST00000580636 98 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 TUG1_4.1-201ENST00000619464 181 ntBASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC87Q9NVE4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.4□□□□□ -1.86
CCDC87Q9NVE4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNU1-96P-201ENST00000364163 162 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNU6-597P-201ENST00000365620 102 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNU6-1080P-201ENST00000383982 107 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 Y_RNA.432-201ENST00000384087 111 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNU6-136P-201ENST00000384663 107 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNU6-1168P-201ENST00000390831 104 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 SNORA75.5-201ENST00000391291 81 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 AC060773.1-201ENST00000421698 310 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 AL353689.1-201ENST00000438895 199 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 AC245102.2-201ENST00000448956 180 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP282-201ENST00000516355 108 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 MIR3117-201ENST00000584034 78 ntBASIC3.4□□□□□ -1.87
CCDC87Q9NVE4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 MIR340-201ENST00000362125 95 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 RNU6-768P-201ENST00000384683 107 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 Z98742.3-201ENST00000418637 326 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 MTND4LP9-201ENST00000427694 174 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 RPS15AP28-201ENST00000435088 386 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 HMGN2P34-201ENST00000437647 269 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC011406.1-201ENST00000512440 370 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 RNU6-1299P-201ENST00000516316 100 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 RNU6-197P-201ENST00000516680 100 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC245166.1-201ENST00000521012 253 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 IGKV3-31-201ENST00000523109 329 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC011604.1-201ENST00000545978 196 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 MIR4506-201ENST00000584693 77 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC007229.1-201ENST00000590455 412 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AL929325.1-201ENST00000603096 117 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC008264.2-201ENST00000610193 3731 ntBASIC3.39□□□□□ -1.87
CCDC87Q9NVE4 AC100821.1-201ENST00000523153 2479 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 snoU2-30.2-201ENST00000362805 70 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 SNORD50B-201ENST00000364995 70 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNU7-197P-201ENST00000458836 62 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 AC018868.1-201ENST00000491307 315 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP385-201ENST00000515947 110 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP272-201ENST00000516095 111 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNU7-99P-201ENST00000516271 62 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP153-201ENST00000516498 76 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 uc_338.4-201ENST00000616635 176 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 U4atac.1-201ENST00000618345 95 ntBASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC87Q9NVE4 Y_RNA.99-201ENST00000363138 105 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 SNORA25B-201ENST00000365507 128 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 SNORA26-201ENST00000391286 122 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 AC245047.4-201ENST00000433189 144 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 RNU1-131P-201ENST00000458943 161 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 AP001340.1-201ENST00000624405 217 ntBASIC3.37□□□□□ -1.87
CCDC87Q9NVE4 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 Y_RNA.420-201ENST00000384043 110 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 SNORA26.7-201ENST00000391288 122 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP425-201ENST00000410336 112 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 SNORD77.4-201ENST00000516158 81 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 RPL23AP91-201ENST00000569211 455 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 AL049861.1-201ENST00000603130 150 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 AL353149.1-201ENST00000610667 244 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 ZNF702P-202ENST00000434269 1966 ntBASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.36□□□□□ -1.87
CCDC87Q9NVE4 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP289-201ENST00000362332 137 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RNU6-484P-201ENST00000384016 107 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 MIR562-201ENST00000384894 95 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RNU4-53P-201ENST00000410828 140 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 EDDM3CP-201ENST00000415977 425 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 TRIAP1P1-201ENST00000427062 225 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 AC244505.4-201ENST00000434905 287 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 SSXP5-201ENST00000443473 287 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RN7SL75P-201ENST00000461926 281 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP320-201ENST00000516263 124 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 RNU6-1096P-201ENST00000517089 102 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 DEFB122-202ENST00000569013 197 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 MIR4662B-201ENST00000579498 81 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 MIR3605-201ENST00000583214 100 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 AL359075.3-201ENST00000613288 217 ntBASIC3.35□□□□□ -1.87
CCDC87Q9NVE4 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 SNORA25.7-201ENST00000364375 127 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 RNA5SP125-201ENST00000364843 120 ntBASIC3.34□□□□□ -1.87
CCDC87Q9NVE4 MIR515-2-201ENST00000384883 83 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms