Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNORA40.19-201ENST00000390846 128 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.39□□□□□ -2.03
TDP1Q9NUW8 CST2P1-201ENST00000425770 87 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 Z98949.2-201ENST00000440996 144 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AC011753.1-201ENST00000451001 220 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.39□□□□□ -2.03
TDP1Q9NUW8 RNY3P16-201ENST00000516338 101 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AP005660.1-201ENST00000522972 293 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AC024405.2-202ENST00000532731 184 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR3670-2-201ENST00000582974 65 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR3670-1-201ENST00000584160 65 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR3670-3-201ENST00000584855 65 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AC073413.2-201ENST00000604332 360 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 AP003357.1-201ENST00000604497 148 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR3670-4-201ENST00000612260 65 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 MIR7843-201ENST00000622274 79 ntBASIC2.39□□□□□ -2.03
TDP1Q9NUW8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TDP1Q9NUW8 RNU6-653P-201ENST00000363074 106 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 RNU4-13P-201ENST00000364019 141 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 SNORA25.6-201ENST00000364121 118 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 MT-TR-201ENST00000387439 65 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 RNU2-64P-201ENST00000411315 191 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 RNA5SP270-201ENST00000411361 118 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 RPS15AP28-201ENST00000435088 386 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.38□□□□□ -2.03
TDP1Q9NUW8 SNORA81.3-201ENST00000517283 198 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
TDP1Q9NUW8 CBX3P4-201ENST00000538909 354 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 AC005786.1-201ENST00000588553 154 ntBASIC2.38□□□□□ -2.03
TDP1Q9NUW8 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.38□□□□□ -2.03
TDP1Q9NUW8 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.29-201ENST00000362570 113 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 RNU6-1205P-201ENST00000363625 106 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.293-201ENST00000364908 93 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.308-201ENST00000365043 101 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 MIR524-201ENST00000385242 87 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 RNU11-3P-201ENST00000391111 133 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 AL138752.1-201ENST00000452964 351 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.644-201ENST00000459006 113 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 HMGB3P3-201ENST00000510526 400 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.674-201ENST00000516362 113 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 RNU1-142P-201ENST00000516682 145 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 RNA5SP82-201ENST00000516707 92 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 AC100767.1-201ENST00000528178 123 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 POLR3GP1-201ENST00000594073 261 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 Z83818.1-201ENST00000603584 150 ntBASIC2.37□□□□□ -2.03
TDP1Q9NUW8 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.37□□□□□ -2.03
TDP1Q9NUW8 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.37□□□□□ -2.03
TDP1Q9NUW8 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
TDP1Q9NUW8 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TDP1Q9NUW8 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TDP1Q9NUW8 RNA5SP432-201ENST00000362480 116 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 RNU6-923P-201ENST00000364753 107 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 DEFA7P-201ENST00000382676 285 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 MIR515-2-201ENST00000384883 83 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 MIR515-1-201ENST00000384884 83 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 RNA5SP323-201ENST00000391094 133 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 SNORA36B-201ENST00000410438 131 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 Y_RNA.793-201ENST00000411222 111 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 HMGN2P3-201ENST00000433603 273 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 HMGN2P5-201ENST00000436882 273 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 RPS4XP11-201ENST00000446897 772 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.36□□□□□ -2.03
TDP1Q9NUW8 RNU7-116P-201ENST00000516940 62 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
TDP1Q9NUW8 AC127455.1-201ENST00000565496 145 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.36□□□□□ -2.03
TDP1Q9NUW8 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
TDP1Q9NUW8 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TDP1Q9NUW8 MIR21-201ENST00000362134 72 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 RNU4-10P-201ENST00000364383 140 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 RNU6-47P-201ENST00000383866 107 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 SNORA8-201ENST00000384574 139 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 RNA5SP465-201ENST00000391195 109 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 RNU6-493P-201ENST00000391321 108 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 AC018634.1-201ENST00000437554 401 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.35□□□□□ -2.03
TDP1Q9NUW8 AC024995.1-201ENST00000523014 93 ntBASIC2.35□□□□□ -2.03
TDP1Q9NUW8 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TDP1Q9NUW8 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.35□□□□□ -2.03
TDP1Q9NUW8 SNORA11.4-201ENST00000408823 129 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.34□□□□□ -2.03
TDP1Q9NUW8 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.34□□□□□ -2.03
TDP1Q9NUW8 AC091021.1-201ENST00000468051 388 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RPS26P45-201ENST00000471748 340 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RPL23AP54-201ENST00000495129 419 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RNU7-193P-201ENST00000516723 65 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RNU6-182P-201ENST00000516970 105 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RNU6-1096P-201ENST00000517089 102 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.34□□□□□ -2.03
TDP1Q9NUW8 MIR4308-201ENST00000580634 81 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 AC004792.1-201ENST00000614523 137 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 MIR6766-201ENST00000622641 72 ntBASIC2.34□□□□□ -2.03
TDP1Q9NUW8 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
TDP1Q9NUW8 RNU6-1020P-201ENST00000363684 107 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 RNU6-144P-201ENST00000383951 107 ntBASIC2.33□□□□□ -2.04
TDP1Q9NUW8 SNORA72-201ENST00000384339 132 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms