Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RPS29P29-201ENST00000456396 171 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 OR2A41P-201ENST00000473586 105 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 OR9P1P-201ENST00000496431 281 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AC091951.2-201ENST00000500762 203 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RNU6-1012P-201ENST00000516606 109 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RN7SKP88-201ENST00000516847 250 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 RNU6-699P-201ENST00000517081 110 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AC068338.1-201ENST00000565567 176 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AC055872.1-201ENST00000570978 278 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AL050343.2-201ENST00000607338 280 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 7SK.8-201ENST00000612110 250 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 7SK.11-201ENST00000615477 250 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 7SK.13-201ENST00000622040 250 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 AC138305.3-201ENST00000624988 240 ntBASIC1.19□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.70-201ENST00000362886 110 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.191-201ENST00000363972 113 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 RNU6-1040P-201ENST00000383974 107 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 RNU6-424P-201ENST00000384367 105 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 RNU6-505P-201ENST00000384427 107 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 MIR628-201ENST00000385229 95 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 MIR1276-201ENST00000408707 83 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 MTCO2P27-201ENST00000420740 428 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 CALM2P4-201ENST00000430810 426 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 HSPE1P13-201ENST00000451143 297 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 AL049830.1-201ENST00000468034 425 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 AC092991.1-201ENST00000477176 376 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 RNU6-1291P-201ENST00000516591 104 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 AL078603.1-201ENST00000603824 313 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 AC084781.2-201ENST00000615568 161 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 AC106754.2-201ENST00000623006 233 ntBASIC1.18□□□□□ -2.22
DDX28Q9NUL7 RNU6-199P-201ENST00000362954 107 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 RNU6-626P-201ENST00000363354 107 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 SNORA25.8-201ENST00000364831 128 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 RNU6-136P-201ENST00000384663 107 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 MIR653-201ENST00000385279 96 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 U8.16-201ENST00000391279 133 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 RNU2-54P-201ENST00000410299 190 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AC093019.1-201ENST00000443135 252 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 RNU6-875P-201ENST00000516488 106 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 RNU6-1096P-201ENST00000517089 102 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AL355375.2-201ENST00000574825 175 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 MIR4778-201ENST00000577635 80 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AC005176.2-201ENST00000596933 147 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AC240442.1-201ENST00000616055 283 ntBASIC1.17□□□□□ -2.22
DDX28Q9NUL7 AC005592.1-201ENST00000566527 1640 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.27-201ENST00000362540 103 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.101-201ENST00000363154 102 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.187-201ENST00000363918 113 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.303-201ENST00000364998 94 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.428-201ENST00000384078 102 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 RNU6-20P-201ENST00000384106 107 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 RNU6-42P-201ENST00000384165 107 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 MIR1285-1-201ENST00000408593 84 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.16□□□□□ -2.22
DDX28Q9NUL7 AC233266.1-201ENST00000454518 96 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 RNU1-123P-201ENST00000458950 160 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 RNU7-152P-201ENST00000458982 64 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 Y_RNA.632-201ENST00000459189 102 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 RNU6-63P-201ENST00000516690 95 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 MIR4659A-201ENST00000580269 81 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 VN1R91P-201ENST00000594377 169 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 AC242852.1-201ENST00000612151 96 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 AC244015.1-201ENST00000622301 99 ntBASIC1.16□□□□□ -2.22
DDX28Q9NUL7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.22
DDX28Q9NUL7 RNA5SP327-201ENST00000362494 101 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.463-201ENST00000384271 102 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 AL031003.1-201ENST00000404229 172 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 RNA5SP511-201ENST00000410487 115 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.15□□□□□ -2.23
DDX28Q9NUL7 AL162725.1-201ENST00000435405 301 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 RNU7-12P-201ENST00000516030 62 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 RNA5SP220-201ENST00000516298 104 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 RNU6-1337P-201ENST00000516525 95 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 AC090821.2-201ENST00000523552 176 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 AC090049.2-201ENST00000550377 109 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 MIR4452-201ENST00000583004 71 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 MIR6734-201ENST00000621166 68 ntBASIC1.15□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.230-201ENST00000364348 109 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.263-201ENST00000364659 114 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 RNU6-1009P-201ENST00000390996 107 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 AL354751.2-201ENST00000415471 210 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 AC096644.2-201ENST00000429278 159 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.14□□□□□ -2.23
DDX28Q9NUL7 Z98949.2-201ENST00000440996 144 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 RNU6-322P-201ENST00000516010 103 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 RNU6-165P-201ENST00000517170 99 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 SNORD116.3-201ENST00000517176 78 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 MIR4801-201ENST00000582704 82 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 MIR3660-201ENST00000584845 100 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 GHRLOS.1-201ENST00000610995 70 ntBASIC1.14□□□□□ -2.23
DDX28Q9NUL7 MIRLET7C-201ENST00000362160 84 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 Y_RNA.146-201ENST00000363549 102 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 RNU4-41P-201ENST00000364426 143 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 SNORA2.2-201ENST00000365473 135 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 RNU6-1199P-201ENST00000411249 104 ntBASIC1.13□□□□□ -2.23
DDX28Q9NUL7 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 182.8 ms