Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RPL30P15-201ENST00000457129 321 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 AC060780.3-201ENST00000589464 80 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 AC016727.1-205ENST00000605437 569 ntBASIC0.68□□□□□ -2.3
EXOSC4Q9NPD3 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 RNY3P11-201ENST00000364153 102 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-969P-201ENST00000383900 105 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 MIR562-201ENST00000384894 95 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AL354751.2-201ENST00000415471 210 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AL606490.4-201ENST00000423117 127 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 ELOCP24-201ENST00000456370 334 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 PDCD5P2-201ENST00000507570 312 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1053P-201ENST00000515930 101 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-1337P-201ENST00000516525 95 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AC068790.6-201ENST00000602558 258 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AC087588.2-201ENST00000617667 426 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AL008636.1-201ENST00000625038 1018 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 AL669831.3-213ENST00000636676 183 ntBASIC0.67□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.101-201ENST00000363154 102 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 Y_RNA.172-201ENST00000363765 102 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 RNU6-163P-201ENST00000384396 106 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 MIR520G-201ENST00000385064 90 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 MIR605-201ENST00000385078 83 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 SNORA75.2-201ENST00000391138 150 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 SNORA75.3-201ENST00000391231 150 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 MIR891A-201ENST00000401237 79 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 FCF1P9-201ENST00000412546 282 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AL603825.1-201ENST00000438481 80 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 RPL39P39-201ENST00000455840 151 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 LINC01399-202ENST00000458450 244 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AC116353.2-201ENST00000505332 712 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AC114811.1-201ENST00000507207 168 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 AC005899.2-201ENST00000584353 90 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 MIR3192-201ENST00000584920 77 ntBASIC0.66□□□□□ -2.3
EXOSC4Q9NPD3 SNORD115-30-201ENST00000364117 82 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 SNORD114-24-201ENST00000365029 72 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-767P-201ENST00000384132 107 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1310P-201ENST00000384153 107 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 SNORD116-13-201ENST00000384408 92 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 SNORA80D-201ENST00000384488 135 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 MIR608-201ENST00000384820 100 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-1156P-201ENST00000410365 100 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.646-201ENST00000410980 101 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 MTND1P34-201ENST00000438556 671 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 RNU7-169P-201ENST00000459456 61 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 RNU2-12P-201ENST00000517216 168 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 MIR3973-201ENST00000579824 107 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 AC120024.3-201ENST00000603167 156 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 AL357312.1-201ENST00000603879 298 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 PRELID3BP2-201ENST00000605362 201 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 AL591926.4-201ENST00000616895 298 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 CASC19-280ENST00000642102 1351 ntBASIC0.65□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.72-201ENST00000362894 103 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-833P-201ENST00000363486 107 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.160-201ENST00000363677 92 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 MIR516B2-201ENST00000385190 85 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 SNORA69.1-201ENST00000390904 137 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 SNORD12-201ENST00000391002 90 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 RNU2-64P-201ENST00000411315 191 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 MTND4P28-201ENST00000426217 387 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 AL162725.1-201ENST00000435405 301 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 SNORA25.10-201ENST00000515926 124 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-966P-201ENST00000516479 104 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 AL358944.1-201ENST00000528537 144 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 AC108706.1-201ENST00000611053 297 ntBASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.64□□□□□ -2.31
EXOSC4Q9NPD3 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 AC023934.1-201ENST00000574529 2389 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 MIR337-201ENST00000362281 93 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-845P-201ENST00000362578 103 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-310P-201ENST00000384655 107 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 MIR1298-201ENST00000408783 112 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 Y_RNA.592-201ENST00000410274 109 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 RNU6-370P-201ENST00000411008 104 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 MLLT10P1-201ENST00000418346 262 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 PDCL2P1-201ENST00000419302 352 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 AC093019.1-201ENST00000443135 252 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 RPS20P10-201ENST00000451209 253 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 RNU7-21P-201ENST00000459430 62 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 AC117454.1-201ENST00000491120 168 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 SNORD111.1-201ENST00000516421 86 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 AC090142.3-201ENST00000519012 385 ntBASIC0.63□□□□□ -2.31
EXOSC4Q9NPD3 AC004832.4-201ENST00000608952 331 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms