Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNA5SP102-201ENST00000516865 106 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNU11-2P-201ENST00000516898 142 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNU6-273P-201ENST00000516937 96 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 MIR5701-3-201ENST00000578890 82 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 MIR5701-1-201ENST00000585138 82 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 MIR5701-2-201ENST00000615634 82 ntBASIC0.22□□□□□ -2.37
VCX3AQ9NNX9 RNU6-874P-201ENST00000362390 105 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 RNU6-879P-201ENST00000364328 108 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 MTND1P4-201ENST00000435196 415 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 MTND1P26-201ENST00000440488 538 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 MTND1P17-201ENST00000448961 204 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 U8.22-201ENST00000459141 133 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 SNORD123-201ENST00000459473 70 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 SNORA40.9-201ENST00000515895 93 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 RNU6-864P-201ENST00000516256 108 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 RNU1-54P-201ENST00000517181 120 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 AP000770.2-201ENST00000623694 100 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 AC090617.10-201ENST00000624308 134 ntBASIC0.21□□□□□ -2.38
VCX3AQ9NNX9 Y_RNA.253-201ENST00000364562 112 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 RNU1-93P-201ENST00000364704 169 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 MIR522-201ENST00000385071 87 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AL390729.2-201ENST00000416137 156 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 SNORD5.1-201ENST00000458800 75 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 RNU7-87P-201ENST00000459343 62 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AC108740.1-201ENST00000498629 225 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1337P-201ENST00000516525 95 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1088P-201ENST00000516850 104 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AC105029.1-201ENST00000520250 669 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AC093027.1-201ENST00000546698 429 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 MIR4714-201ENST00000580728 77 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AC005014.2-201ENST00000607795 599 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 AC008133.2-201ENST00000624540 351 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 MIR1321-201ENST00000637766 79 ntBASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.2□□□□□ -2.38
VCX3AQ9NNX9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 MIR1-1-201ENST00000362147 71 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNY1P16-201ENST00000363063 111 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 SNORD115-30-201ENST00000364117 82 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNU6-318P-201ENST00000384283 103 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNU6-342P-201ENST00000384521 104 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 SNORA2B-201ENST00000384583 137 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 Y_RNA.557-201ENST00000384680 107 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 MIR216A-201ENST00000385063 110 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNU6-613P-201ENST00000410412 108 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNA5SP475-201ENST00000410568 110 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 RNU6-321P-201ENST00000410912 106 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 SNORD45.4-201ENST00000516629 73 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 MIR4498-201ENST00000577599 66 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AC245008.1-201ENST00000608123 476 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 MIR4251-201ENST00000635819 61 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AC024614.3-201ENST00000637860 256 ntBASIC0.19□□□□□ -2.38
VCX3AQ9NNX9 AC090625.1-201ENST00000357130 210 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MIR337-201ENST00000362281 93 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MIR96-201ENST00000362288 78 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1090P-201ENST00000364065 94 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MIR573-201ENST00000384964 99 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1148P-201ENST00000410992 104 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 AC005534.2-201ENST00000431047 433 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 HMGN2P32-201ENST00000444648 269 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 UBE2V1P7-201ENST00000446395 340 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 SNORA25.10-201ENST00000515926 124 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1314P-201ENST00000517139 104 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 RNU2-12P-201ENST00000517216 168 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MTND3P12-201ENST00000559068 328 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 AL355073.2-201ENST00000612106 557 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MIR6128-201ENST00000615528 109 ntBASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.18□□□□□ -2.38
VCX3AQ9NNX9 MIR103A1-201ENST00000362165 78 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 RNU6-369P-201ENST00000362515 102 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 snoU2-30.1-201ENST00000365012 70 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 SNORD116-9-201ENST00000384000 95 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 SNORD116-3-201ENST00000384287 95 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 SNORD116-7-201ENST00000384404 95 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 SNORD116-5-201ENST00000384462 95 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 RNU6-700P-201ENST00000391043 107 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 RNU2-16P-201ENST00000410712 136 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 MTND1P1-201ENST00000445453 368 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC105313.1-201ENST00000509121 353 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 MIR2115-201ENST00000516657 100 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC104984.5-201ENST00000586878 94 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC136443.5-201ENST00000603741 370 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC104695.3-201ENST00000604052 296 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 AC243829.6-201ENST00000612652 106 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 RMST_2.1-201ENST00000617263 136 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 MIR3662-201ENST00000637030 95 ntBASIC0.17□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1084P-201ENST00000362498 107 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 Y_RNA.168-201ENST00000363740 102 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 RNU6-831P-201ENST00000384548 107 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 RNU6-373P-201ENST00000411247 98 ntBASIC0.16□□□□□ -2.38
VCX3AQ9NNX9 MLLT10P1-201ENST00000418346 262 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms