Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 RNU6-1016P-201ENST00000516689 94 ntBASIC0.74□□□□□ -2.29
RPRD1AQ96P16 AC012557.2-201ENST00000605919 418 ntBASIC0.74□□□□□ -2.29
RPRD1AQ96P16 AC106800.4-201ENST00000614905 153 ntBASIC0.74□□□□□ -2.29
RPRD1AQ96P16 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
RPRD1AQ96P16 RNY1P16-201ENST00000363063 111 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.336-201ENST00000365307 109 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.436-201ENST00000384097 102 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.594-201ENST00000410373 140 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC016907.1-201ENST00000419483 435 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 MTCYBP10-201ENST00000424905 650 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 PIGPP3-201ENST00000425307 415 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 RPEP5-201ENST00000441137 268 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 UBE2V1P7-201ENST00000446395 340 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.73□□□□□ -2.29
RPRD1AQ96P16 CYCTP-201ENST00000504253 315 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 SNORA70.12-201ENST00000516084 153 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.670-201ENST00000516255 105 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC022868.1-201ENST00000517767 391 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC133485.1-201ENST00000567176 124 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC138907.6-201ENST00000568401 126 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC120024.3-201ENST00000603167 156 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 AC093913.1-201ENST00000614178 329 ntBASIC0.73□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.2-201ENST00000362330 96 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.358-201ENST00000365491 99 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 Y_RNA.573-201ENST00000384763 105 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 MIR508-201ENST00000384857 115 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 AC074085.1-201ENST00000413598 418 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 AC117454.1-201ENST00000491120 168 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 EIF1P4-201ENST00000572664 335 ntBASIC0.72□□□□□ -2.29
RPRD1AQ96P16 CASC19-280ENST00000642102 1351 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.243-201ENST00000364481 109 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 RNU6-163P-201ENST00000384396 106 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 RNU6-1050P-201ENST00000410388 107 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 RNA5SP475-201ENST00000410568 110 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 AL354751.2-201ENST00000415471 210 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 SUMO1P2-201ENST00000452524 304 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 ELOCP24-201ENST00000456370 334 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 RNU6-329P-201ENST00000459618 107 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 AC023442.1-201ENST00000531247 422 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.71□□□□□ -2.3
RPRD1AQ96P16 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.71□□□□□ -2.3
RPRD1AQ96P16 AL590095.2-201ENST00000604136 117 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
RPRD1AQ96P16 AC027279.3-201ENST00000625055 122 ntBASIC0.71□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.361-201ENST00000365515 120 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 MIR548K-201ENST00000408406 116 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 RNA5SP511-201ENST00000410487 115 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 RPS26P5-201ENST00000418544 335 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 AC114811.1-201ENST00000507207 168 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 RNU6-720P-201ENST00000516363 108 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 MIR5000-201ENST00000577717 103 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 MIR4714-201ENST00000580728 77 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 AC080013.6-201ENST00000606185 215 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 AC022709.1-201ENST00000615967 87 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 MIR3688-2-201ENST00000636963 87 ntBASIC0.7□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.3-201ENST00000362331 103 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 SNORD114-7-201ENST00000362520 77 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 RNA5SP264-201ENST00000363115 107 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 SNORD68-201ENST00000363214 84 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 MIR548F5-201ENST00000408421 86 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 RNU6-733P-201ENST00000410759 104 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.69□□□□□ -2.3
RPRD1AQ96P16 AL035398.1-201ENST00000430869 322 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 RPS3AP52-201ENST00000435639 297 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.69□□□□□ -2.3
RPRD1AQ96P16 AC093019.1-201ENST00000443135 252 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 AC009229.3-201ENST00000608056 282 ntBASIC0.69□□□□□ -2.3
RPRD1AQ96P16 RNU6-593P-201ENST00000364716 112 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.453-201ENST00000384223 109 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.516-201ENST00000384541 124 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 SNORD115-47-201ENST00000391226 86 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AC092423.1-201ENST00000430165 186 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 RPL7P42-201ENST00000481005 679 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AP003716.2-201ENST00000528260 108 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AL591926.4-201ENST00000616895 298 ntBASIC0.68□□□□□ -2.3
RPRD1AQ96P16 AC023934.1-201ENST00000574529 2389 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 SNORD115-30-201ENST00000364117 82 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 U8.5-201ENST00000364528 136 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.330-201ENST00000365230 109 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 MIR452-201ENST00000385020 85 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 MIR1298-201ENST00000408783 112 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 SNORD12B-201ENST00000410433 91 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.67□□□□□ -2.3
RPRD1AQ96P16 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AL162725.1-201ENST00000435405 301 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 RNU6-1337P-201ENST00000516525 95 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 Y_RNA.708-201ENST00000516950 96 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AC018638.8-201ENST00000588755 281 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 AL353765.1-201ENST00000605514 183 ntBASIC0.67□□□□□ -2.3
RPRD1AQ96P16 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 165.4 ms