Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC134878.1-201ENST00000619901 243 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 SNORD56.2-201ENST00000363242 71 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 SNORD45.3-201ENST00000363836 72 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 FCF1P9-201ENST00000412546 282 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-0.69□□□□□ -2.52
USF3Q68DE3 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC091133.4-201ENST00000511142 308 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.69□□□□□ -2.52
USF3Q68DE3 MTND3P13-201ENST00000574391 343 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC121247.2-201ENST00000604776 136 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC131235.4-201ENST00000609288 620 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AC013437.2-201ENST00000639587 677 ntBASIC-0.69□□□□□ -2.52
USF3Q68DE3 AL117351.1-201ENST00000438864 766 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 MTCO2P3-201ENST00000442543 421 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-0.7□□□□□ -2.52
USF3Q68DE3 Z94722.1-201ENST00000604328 474 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 SNORD11B-201ENST00000607707 90 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC245008.1-201ENST00000608123 476 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 U4.2-201ENST00000618561 85 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC091948.2-201ENST00000636510 279 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC073869.9-201ENST00000641610 120 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 SNORA27.1-201ENST00000362604 124 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-0.7□□□□□ -2.52
USF3Q68DE3 MTND4P3-201ENST00000417829 541 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 MTCO1P20-201ENST00000425366 358 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-0.7□□□□□ -2.52
USF3Q68DE3 ZNF114P1-201ENST00000453500 292 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC079140.5-201ENST00000507882 310 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 RNU6-1007P-201ENST00000516586 107 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC068880.4-201ENST00000623082 495 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 AC019226.2-201ENST00000625973 424 ntBASIC-0.7□□□□□ -2.52
USF3Q68DE3 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 Y_RNA.192-201ENST00000363977 102 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 RNU6-1322P-201ENST00000364309 107 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 SNORA40.2-201ENST00000390847 128 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 MTCYBP4-201ENST00000401524 249 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 MIR1285-2-201ENST00000408311 88 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 AL031274.1-201ENST00000450334 232 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 MTND1P12-201ENST00000455231 147 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 MIR3118-1-201ENST00000581787 76 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 SCARNA4-201ENST00000629045 128 ntBASIC-0.71□□□□□ -2.52
USF3Q68DE3 MIR365A-201ENST00000362260 87 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 Y_RNA.410-201ENST00000383992 113 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 RNU6-535P-201ENST00000384722 107 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 Y_RNA.576-201ENST00000384781 102 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 MIR563-201ENST00000385080 79 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-0.72□□□□□ -2.52
USF3Q68DE3 SNORD115.1-201ENST00000391109 76 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 SNORA27.4-201ENST00000516650 95 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 RNU6-201P-201ENST00000517100 61 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 MTND1P5-201ENST00000517906 940 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 MTND4P33-201ENST00000556706 766 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 MTND5P34-201ENST00000568888 325 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 MIR4791-201ENST00000607666 84 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 AL445984.1-201ENST00000637834 659 ntBASIC-0.72□□□□□ -2.52
USF3Q68DE3 RNU6-227P-201ENST00000362865 103 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 RNU6-727P-201ENST00000363592 107 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 RNU6-641P-201ENST00000384006 107 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 MIR516B1-201ENST00000385211 90 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 RNU6-298P-201ENST00000390888 96 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 AC091959.1-201ENST00000495857 238 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 AC116562.3-201ENST00000506136 177 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-0.72□□□□□ -2.53
USF3Q68DE3 AP003168.1-201ENST00000530091 307 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-0.72□□□□□ -2.53
USF3Q68DE3 MIR4324-201ENST00000584846 72 ntBASIC-0.72□□□□□ -2.53
USF3Q68DE3 Y_RNA.472-201ENST00000384322 102 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 MIR215-201ENST00000384858 110 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU6-602P-201ENST00000411155 105 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.73□□□□□ -2.53
USF3Q68DE3 AL355994.1-201ENST00000424379 260 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 MTATP6P17-201ENST00000431030 672 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-0.73□□□□□ -2.53
USF3Q68DE3 SUMO1P2-201ENST00000452524 304 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AC069113.1-201ENST00000517763 267 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AGGF1P4-201ENST00000568249 801 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-0.73□□□□□ -2.53
USF3Q68DE3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU5B-4P-201ENST00000363508 111 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNA5SP205-201ENST00000364653 136 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 SNORD87-201ENST00000364849 89 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU6-407P-201ENST00000365280 104 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU6-769P-201ENST00000384407 104 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNU6-24P-201ENST00000384440 107 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 Y_RNA.555-201ENST00000384673 110 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AL390729.2-201ENST00000416137 156 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AC006210.1-201ENST00000424882 111 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 MRPS10P1-201ENST00000448483 130 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AC018710.1-201ENST00000506509 158 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 SNORA18.4-201ENST00000516440 124 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNA5SP54-201ENST00000516951 92 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 RNA5SP47-201ENST00000517230 109 ntBASIC-0.73□□□□□ -2.53
USF3Q68DE3 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.73□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms