Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.73□□□□□ -1.49
NCBP3Q53F19 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NCBP3Q53F19 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
NCBP3Q53F19 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.73□□□□□ -1.49
NCBP3Q53F19 AC008163.1-202ENST00000636004 2889 ntBASIC5.73□□□□□ -1.49
NCBP3Q53F19 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
NCBP3Q53F19 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.72□□□□□ -1.49
NCBP3Q53F19 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
NCBP3Q53F19 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
NCBP3Q53F19 SNORA24-201ENST00000384096 131 ntBASIC5.72□□□□□ -1.49
NCBP3Q53F19 SNORD38.2-201ENST00000384470 69 ntBASIC5.72□□□□□ -1.49
NCBP3Q53F19 RNA5SP146-201ENST00000410743 123 ntBASIC5.72□□□□□ -1.49
NCBP3Q53F19 MIR3134-201ENST00000579433 74 ntBASIC5.72□□□□□ -1.49
NCBP3Q53F19 AC105081.1-201ENST00000617727 106 ntBASIC5.72□□□□□ -1.49
NCBP3Q53F19 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
NCBP3Q53F19 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
NCBP3Q53F19 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
NCBP3Q53F19 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.71□□□□□ -1.5
NCBP3Q53F19 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.71□□□□□ -1.5
NCBP3Q53F19 RNU4-32P-201ENST00000363404 141 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 RNA5SP493-201ENST00000364115 91 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 AL157831.1-201ENST00000426134 473 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 RPS29P17-201ENST00000430795 166 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 HMGN1P33-201ENST00000432945 451 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC5.71□□□□□ -1.5
NCBP3Q53F19 snoU13.1-201ENST00000459157 104 ntBASIC5.71□□□□□ -1.5
NCBP3Q53F19 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NCBP3Q53F19 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NCBP3Q53F19 RNU6-1321P-201ENST00000390905 107 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 HDGFP1-201ENST00000405943 252 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 RNU6-1086P-201ENST00000410930 100 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 RN7SL601P-201ENST00000471221 293 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 AC006064.5-201ENST00000541782 248 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 YPEL5P3-201ENST00000547227 352 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC5.7□□□□□ -1.5
NCBP3Q53F19 AL138721.1-201ENST00000616756 179 ntBASIC5.7□□□□□ -1.5
NCBP3Q53F19 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NCBP3Q53F19 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NCBP3Q53F19 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NCBP3Q53F19 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
NCBP3Q53F19 MIR331-201ENST00000362302 94 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 RNA5SP447-201ENST00000363749 119 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 MIR1911-201ENST00000410783 80 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.69□□□□□ -1.5
NCBP3Q53F19 RPS26P28-201ENST00000470806 348 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 RNU7-12P-201ENST00000516030 62 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 SNORA31.10-201ENST00000516482 106 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 AC034105.4-201ENST00000568304 277 ntBASIC5.69□□□□□ -1.5
NCBP3Q53F19 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NCBP3Q53F19 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
NCBP3Q53F19 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
NCBP3Q53F19 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
NCBP3Q53F19 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 SNORA25B-201ENST00000365507 128 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 SNORD66.1-201ENST00000391230 76 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 MIR1262-201ENST00000408276 93 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 AC087499.7-201ENST00000441958 109 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 SCARNA18B-201ENST00000458806 135 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 RNU6-917P-201ENST00000516294 104 ntBASIC5.68□□□□□ -1.5
NCBP3Q53F19 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
NCBP3Q53F19 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NCBP3Q53F19 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NCBP3Q53F19 RNU1-15P-201ENST00000353977 144 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 SNORA60-201ENST00000362396 134 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 RNA5SP175-201ENST00000364275 119 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 RPL18P10-201ENST00000425606 538 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC5.67□□□□□ -1.5
NCBP3Q53F19 MIR4284-201ENST00000578924 81 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 FAM106DP-201ENST00000586416 501 ntBASIC5.67□□□□□ -1.5
NCBP3Q53F19 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
NCBP3Q53F19 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
NCBP3Q53F19 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
NCBP3Q53F19 ANKRD18EP-201ENST00000405487 2632 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 RNU6-624P-201ENST00000363411 107 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 MIR136-201ENST00000385207 82 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
NCBP3Q53F19 SNORA11.4-201ENST00000408823 129 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 RNA5SP168-201ENST00000516642 112 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 AL606490.9-201ENST00000603331 271 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 SNX18P1Y-201ENST00000616231 511 ntBASIC5.66□□□□□ -1.5
NCBP3Q53F19 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NCBP3Q53F19 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
NCBP3Q53F19 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
NCBP3Q53F19 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NCBP3Q53F19 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
NCBP3Q53F19 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
NCBP3Q53F19 ZNF962P-201ENST00000443465 3140 ntBASIC5.65□□□□□ -1.5
NCBP3Q53F19 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
NCBP3Q53F19 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NCBP3Q53F19 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NCBP3Q53F19 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
NCBP3Q53F19 SNORA2B-201ENST00000384583 137 ntBASIC5.65□□□□□ -1.5
NCBP3Q53F19 RNU7-79P-201ENST00000516082 62 ntBASIC5.65□□□□□ -1.5
NCBP3Q53F19 SNORA70.19-201ENST00000516717 90 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms