Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 U1.36-201ENST00000620684 176 ntBASIC2.15□□□□□ -2.07
CIITAP33076 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.15□□□□□ -2.07
CIITAP33076 AL356292.1-201ENST00000283110 373 ntBASIC2.14□□□□□ -2.07
CIITAP33076 Y_RNA.65-201ENST00000362846 100 ntBASIC2.14□□□□□ -2.07
CIITAP33076 Y_RNA.310-201ENST00000365063 113 ntBASIC2.14□□□□□ -2.07
CIITAP33076 RNA5SP138-201ENST00000365098 114 ntBASIC2.14□□□□□ -2.07
CIITAP33076 RNU6-1240P-201ENST00000365155 104 ntBASIC2.14□□□□□ -2.07
CIITAP33076 RNU6-1289P-201ENST00000384431 106 ntBASIC2.14□□□□□ -2.07
CIITAP33076 AL356379.1-201ENST00000414105 126 ntBASIC2.14□□□□□ -2.07
CIITAP33076 HMGN2P38-201ENST00000423806 265 ntBASIC2.14□□□□□ -2.07
CIITAP33076 SNORD2.1-201ENST00000458762 69 ntBASIC2.14□□□□□ -2.07
CIITAP33076 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.14□□□□□ -2.07
CIITAP33076 MIR3684-201ENST00000579779 74 ntBASIC2.14□□□□□ -2.07
CIITAP33076 AC009779.6-201ENST00000603972 165 ntBASIC2.14□□□□□ -2.07
CIITAP33076 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.13□□□□□ -2.07
CIITAP33076 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.82-201ENST00000363000 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.92-201ENST00000363043 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.235-201ENST00000364412 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.287-201ENST00000364853 94 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.306-201ENST00000365015 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.312-201ENST00000365089 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.322-201ENST00000365151 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.368-201ENST00000365547 113 ntBASIC2.13□□□□□ -2.07
CIITAP33076 MIR873-201ENST00000401120 77 ntBASIC2.13□□□□□ -2.07
CIITAP33076 RNU6-847P-201ENST00000411115 108 ntBASIC2.13□□□□□ -2.07
CIITAP33076 RNA5SP450-201ENST00000411206 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AL158823.1-201ENST00000418441 478 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.650-201ENST00000459002 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.13□□□□□ -2.07
CIITAP33076 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
CIITAP33076 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.13□□□□□ -2.07
CIITAP33076 SNORD116-28-201ENST00000516123 91 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.777-201ENST00000516982 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 RNU6-548P-201ENST00000517083 115 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AC027419.1-201ENST00000522976 328 ntBASIC2.13□□□□□ -2.07
CIITAP33076 MIR3169-201ENST00000578032 83 ntBASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.771-201ENST00000598668 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AL162424.1-201ENST00000602325 221 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AC037487.3-201ENST00000606668 112 ntBASIC2.13□□□□□ -2.07
CIITAP33076 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.13□□□□□ -2.07
CIITAP33076 Y_RNA.789-201ENST00000622480 102 ntBASIC2.13□□□□□ -2.07
CIITAP33076 AC022513.1-201ENST00000624512 117 ntBASIC2.13□□□□□ -2.07
CIITAP33076 snoU18.1-201ENST00000629629 71 ntBASIC2.13□□□□□ -2.07
CIITAP33076 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.13□□□□□ -2.07
CIITAP33076 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.13□□□□□ -2.07
CIITAP33076 RNU6-117P-201ENST00000365415 107 ntBASIC2.12□□□□□ -2.07
CIITAP33076 RNU6-160P-201ENST00000384591 107 ntBASIC2.12□□□□□ -2.07
CIITAP33076 Y_RNA.552-201ENST00000384665 112 ntBASIC2.12□□□□□ -2.07
CIITAP33076 SNORA26.5-201ENST00000391215 123 ntBASIC2.12□□□□□ -2.07
CIITAP33076 AL117342.1-201ENST00000404861 406 ntBASIC2.12□□□□□ -2.07
CIITAP33076 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.12□□□□□ -2.07
CIITAP33076 AC008134.1-201ENST00000420943 193 ntBASIC2.12□□□□□ -2.07
CIITAP33076 SUMO1P2-201ENST00000452524 304 ntBASIC2.12□□□□□ -2.07
CIITAP33076 RNU1-131P-201ENST00000458943 161 ntBASIC2.12□□□□□ -2.07
CIITAP33076 AC136628.3-201ENST00000521868 290 ntBASIC2.12□□□□□ -2.07
CIITAP33076 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.12□□□□□ -2.07
CIITAP33076 AC130289.1-201ENST00000577321 73 ntBASIC2.12□□□□□ -2.07
CIITAP33076 MIR4448-201ENST00000584360 86 ntBASIC2.12□□□□□ -2.07
CIITAP33076 AL512605.2-201ENST00000592972 256 ntBASIC2.12□□□□□ -2.07
CIITAP33076 AL008718.3-201ENST00000610217 321 ntBASIC2.12□□□□□ -2.07
CIITAP33076 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.12□□□□□ -2.07
CIITAP33076 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.11□□□□□ -2.07
CIITAP33076 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.11□□□□□ -2.07
CIITAP33076 RNU1-58P-201ENST00000362413 163 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNU6-1272P-201ENST00000362776 107 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNA5SP493-201ENST00000364115 91 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNY4P28-201ENST00000365281 93 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNU6-514P-201ENST00000384208 107 ntBASIC2.11□□□□□ -2.07
CIITAP33076 SNORD116-13-201ENST00000384408 92 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNU6-763P-201ENST00000390865 106 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.11□□□□□ -2.07
CIITAP33076 AL591806.2-201ENST00000433122 173 ntBASIC2.11□□□□□ -2.07
CIITAP33076 HMGN2P34-201ENST00000437647 269 ntBASIC2.11□□□□□ -2.07
CIITAP33076 AL353689.1-201ENST00000438895 199 ntBASIC2.11□□□□□ -2.07
CIITAP33076 U8.19-201ENST00000459095 133 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RPS26P55-201ENST00000471178 356 ntBASIC2.11□□□□□ -2.07
CIITAP33076 AC011406.1-201ENST00000512440 370 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNA5SP20-201ENST00000515976 84 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNU6-1337P-201ENST00000516525 95 ntBASIC2.11□□□□□ -2.07
CIITAP33076 RNA5SP364-201ENST00000516938 78 ntBASIC2.11□□□□□ -2.07
CIITAP33076 SUMO2P18-201ENST00000518873 252 ntBASIC2.11□□□□□ -2.07
CIITAP33076 MIR6845-201ENST00000613182 61 ntBASIC2.11□□□□□ -2.07
CIITAP33076 AC006435.5-201ENST00000624486 112 ntBASIC2.11□□□□□ -2.07
CIITAP33076 AL159152.1-201ENST00000635019 2587 ntBASIC2.11□□□□□ -2.07
CIITAP33076 SNORD115-3-201ENST00000363100 82 ntBASIC2.1□□□□□ -2.07
CIITAP33076 RNU6-1048P-201ENST00000364054 107 ntBASIC2.1□□□□□ -2.07
CIITAP33076 MIR9-3-201ENST00000385084 90 ntBASIC2.1□□□□□ -2.07
CIITAP33076 SNORA26.9-201ENST00000391322 122 ntBASIC2.1□□□□□ -2.07
CIITAP33076 HSPE1P13-201ENST00000451143 297 ntBASIC2.1□□□□□ -2.07
CIITAP33076 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.1□□□□□ -2.07
CIITAP33076 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.1□□□□□ -2.07
CIITAP33076 RNA5SP458-201ENST00000516188 119 ntBASIC2.1□□□□□ -2.07
CIITAP33076 RNU6-1041P-201ENST00000516254 102 ntBASIC2.1□□□□□ -2.07
CIITAP33076 RNU4-71P-201ENST00000516258 113 ntBASIC2.1□□□□□ -2.07
CIITAP33076 RNU6-295P-201ENST00000516901 104 ntBASIC2.1□□□□□ -2.07
CIITAP33076 RNU7-128P-201ENST00000517247 62 ntBASIC2.1□□□□□ -2.07
CIITAP33076 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.1□□□□□ -2.07
CIITAP33076 AL627230.6-201ENST00000611129 280 ntBASIC2.1□□□□□ -2.07
CIITAP33076 MIR338-201ENST00000636369 67 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms