Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 snoU13.19-201ENST00000459148 104 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.691-201ENST00000516611 103 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 RNU6-1213P-201ENST00000517075 94 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC134698.4-201ENST00000523451 826 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 MIR4653-201ENST00000585107 83 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC006380.1-201ENST00000603598 186 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 MTND4LP32-201ENST00000636111 270 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC099654.5-201ENST00000636479 350 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 AC010615.1-201ENST00000594254 1764 ntBASIC0.72□□□□□ -2.29
COL5A3P25940 Y_RNA.70-201ENST00000362886 110 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-271P-201ENST00000363858 105 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-961P-201ENST00000363893 105 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-454P-201ENST00000364292 107 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 Y_RNA.259-201ENST00000364619 101 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-867P-201ENST00000364956 107 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 Y_RNA.415-201ENST00000384012 112 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-793P-201ENST00000384233 104 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 Y_RNA.498-201ENST00000384460 102 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 MIR146A-201ENST00000385201 99 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNA5SP63-201ENST00000391225 112 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AL117342.1-201ENST00000404861 406 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AC092423.1-201ENST00000430165 186 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 USP9YP16-201ENST00000430287 407 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AC236972.2-201ENST00000434979 310 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AC074290.1-201ENST00000448883 135 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.71□□□□□ -2.3
COL5A3P25940 USP9YP23-201ENST00000455085 407 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AC010469.2-201ENST00000496412 480 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU2-34P-201ENST00000516534 121 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-107P-201ENST00000516643 102 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-856P-201ENST00000516959 98 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-902P-201ENST00000517212 91 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AC004584.2-201ENST00000570407 410 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 MIR4723-201ENST00000585070 81 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 AL669831.3-213ENST00000636676 183 ntBASIC0.71□□□□□ -2.3
COL5A3P25940 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.71□□□□□ -2.3
COL5A3P25940 RNU6-874P-201ENST00000362390 105 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 SNORD33-201ENST00000362761 85 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 Y_RNA.384-201ENST00000383909 102 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 RNU6-310P-201ENST00000384655 107 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 MIR520A-201ENST00000384862 85 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 RNU6-159P-201ENST00000391080 106 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.7□□□□□ -2.3
COL5A3P25940 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.7□□□□□ -2.3
COL5A3P25940 AC010154.1-201ENST00000425857 269 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.7□□□□□ -2.3
COL5A3P25940 HMGN2P34-201ENST00000437647 269 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 HSPE1P9-201ENST00000440046 311 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 Y_RNA.635-201ENST00000459041 101 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 Y_RNA.632-201ENST00000459189 102 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 UBL5P1-201ENST00000507979 193 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AL117351.2-201ENST00000513571 157 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 RNU6-1114P-201ENST00000516022 107 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 Y_RNA.683-201ENST00000516508 93 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 SUMO2P16-201ENST00000519475 264 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC091144.1-201ENST00000519573 138 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 FRG2DP-202ENST00000566967 323 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC023932.2-201ENST00000603176 175 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC005014.2-201ENST00000607795 599 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AL353149.1-201ENST00000610667 244 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.7□□□□□ -2.3
COL5A3P25940 MIR8065-201ENST00000620577 100 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC090971.5-201ENST00000621102 293 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC112487.2-201ENST00000637950 304 ntBASIC0.7□□□□□ -2.3
COL5A3P25940 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.7□□□□□ -2.3
COL5A3P25940 RNU6-222P-201ENST00000362438 107 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU4-79P-201ENST00000362764 141 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Y_RNA.58-201ENST00000362807 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU6-626P-201ENST00000363354 107 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Y_RNA.154-201ENST00000363624 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 U3.8-201ENST00000363675 217 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Y_RNA.197-201ENST00000364004 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU6-879P-201ENST00000364328 108 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNY3P1-201ENST00000365085 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNY3-201ENST00000365484 102 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 SNORA22-201ENST00000383907 134 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU6-318P-201ENST00000384283 103 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 SNORA22C-201ENST00000384614 134 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MIR194-1-201ENST00000384892 85 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AL355796.1-201ENST00000406706 323 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 SNORD12B-201ENST00000410433 91 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 Y_RNA.605-201ENST00000410577 105 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.69□□□□□ -2.3
COL5A3P25940 RPS27P16-201ENST00000425758 201 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MTND4P28-201ENST00000426217 387 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.69□□□□□ -2.3
COL5A3P25940 AL606517.2-201ENST00000442855 241 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 ELOCP24-201ENST00000456370 334 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU7-94P-201ENST00000459576 63 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 HMGN1P10-201ENST00000474557 553 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RPL26P26-201ENST00000480251 434 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 FGF7P4-201ENST00000509595 295 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNU6-408P-201ENST00000515910 100 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 RNA5SP20-201ENST00000515976 84 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.69□□□□□ -2.3
COL5A3P25940 AC027419.1-201ENST00000522976 328 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MIR5701-3-201ENST00000578890 82 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 AC091178.2-201ENST00000584401 117 ntBASIC0.69□□□□□ -2.3
COL5A3P25940 MIR5701-1-201ENST00000585138 82 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms