Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU4-76P-201ENST00000364509 141 ntBASIC1.1□□□□□ -2.23
SDC1P18827 Y_RNA.446-201ENST00000384178 104 ntBASIC1.1□□□□□ -2.23
SDC1P18827 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.1□□□□□ -2.23
SDC1P18827 MIR1285-1-201ENST00000408593 84 ntBASIC1.1□□□□□ -2.23
SDC1P18827 RNA5SP511-201ENST00000410487 115 ntBASIC1.1□□□□□ -2.23
SDC1P18827 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.1□□□□□ -2.23
SDC1P18827 RPEP5-201ENST00000441137 268 ntBASIC1.1□□□□□ -2.23
SDC1P18827 AC009474.2-201ENST00000451383 136 ntBASIC1.1□□□□□ -2.23
SDC1P18827 AC233266.1-201ENST00000454518 96 ntBASIC1.1□□□□□ -2.23
SDC1P18827 RNU6-165P-201ENST00000517170 99 ntBASIC1.1□□□□□ -2.23
SDC1P18827 AC242852.1-201ENST00000612151 96 ntBASIC1.1□□□□□ -2.23
SDC1P18827 Y_RNA.804-201ENST00000615262 101 ntBASIC1.1□□□□□ -2.23
SDC1P18827 AC244015.1-201ENST00000622301 99 ntBASIC1.1□□□□□ -2.23
SDC1P18827 MIRLET7C-201ENST00000362160 84 ntBASIC1.09□□□□□ -2.23
SDC1P18827 Y_RNA.172-201ENST00000363765 102 ntBASIC1.09□□□□□ -2.23
SDC1P18827 Y_RNA.315-201ENST00000365117 102 ntBASIC1.09□□□□□ -2.23
SDC1P18827 SNORD116-13-201ENST00000384408 92 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RNU2-61P-201ENST00000411069 191 ntBASIC1.09□□□□□ -2.23
SDC1P18827 AL354751.2-201ENST00000415471 210 ntBASIC1.09□□□□□ -2.23
SDC1P18827 AC108667.1-201ENST00000428618 249 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RPS4XP11-201ENST00000446897 772 ntBASIC1.09□□□□□ -2.23
SDC1P18827 HSPE1P13-201ENST00000451143 297 ntBASIC1.09□□□□□ -2.23
SDC1P18827 MTND3P22-201ENST00000510932 243 ntBASIC1.09□□□□□ -2.23
SDC1P18827 AL117351.2-201ENST00000513571 157 ntBASIC1.09□□□□□ -2.23
SDC1P18827 Y_RNA.661-201ENST00000516003 99 ntBASIC1.09□□□□□ -2.23
SDC1P18827 SNORA70.12-201ENST00000516084 153 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RNU6-155P-201ENST00000516347 100 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RNU4-77P-201ENST00000516692 156 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RNU6-922P-201ENST00000516753 99 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RNU7-28P-201ENST00000516759 62 ntBASIC1.09□□□□□ -2.23
SDC1P18827 RN7SKP88-201ENST00000516847 250 ntBASIC1.09□□□□□ -2.23
SDC1P18827 AC092447.9-201ENST00000603395 144 ntBASIC1.09□□□□□ -2.23
SDC1P18827 7SK.8-201ENST00000612110 250 ntBASIC1.09□□□□□ -2.23
SDC1P18827 7SK.11-201ENST00000615477 250 ntBASIC1.09□□□□□ -2.23
SDC1P18827 AL353770.2-201ENST00000620024 78 ntBASIC1.09□□□□□ -2.23
SDC1P18827 7SK.13-201ENST00000622040 250 ntBASIC1.09□□□□□ -2.23
SDC1P18827 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.09□□□□□ -2.24
SDC1P18827 Y_RNA.5-201ENST00000362334 102 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNA5SP327-201ENST00000362494 101 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNU6-199P-201ENST00000362954 107 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNU4-41P-201ENST00000364426 143 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNA5SP482-201ENST00000391269 118 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AC236972.2-201ENST00000434979 310 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AL162725.1-201ENST00000435405 301 ntBASIC1.08□□□□□ -2.24
SDC1P18827 Z98949.2-201ENST00000440996 144 ntBASIC1.08□□□□□ -2.24
SDC1P18827 DYNLT3P2-201ENST00000442517 295 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AC093850.1-201ENST00000454121 251 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AL049830.1-201ENST00000468034 425 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNU6-436P-201ENST00000516171 114 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RNU6-917P-201ENST00000516294 104 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AL358944.1-201ENST00000528537 144 ntBASIC1.08□□□□□ -2.24
SDC1P18827 RAB11AP2-201ENST00000545905 639 ntBASIC1.08□□□□□ -2.24
SDC1P18827 MIR5188-201ENST00000583467 113 ntBASIC1.08□□□□□ -2.24
SDC1P18827 MIR4769-201ENST00000584126 77 ntBASIC1.08□□□□□ -2.24
SDC1P18827 MIR4795-201ENST00000584182 89 ntBASIC1.08□□□□□ -2.24
SDC1P18827 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.08□□□□□ -2.24
SDC1P18827 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.08□□□□□ -2.24
SDC1P18827 AC068647.2-201ENST00000637380 353 ntBASIC1.08□□□□□ -2.24
SDC1P18827 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SDC1P18827 MIR378A-201ENST00000362177 66 ntBASIC1.07□□□□□ -2.24
SDC1P18827 RNU4-73P-201ENST00000363164 141 ntBASIC1.07□□□□□ -2.24
SDC1P18827 RNU6-324P-201ENST00000363957 106 ntBASIC1.07□□□□□ -2.24
SDC1P18827 Y_RNA.230-201ENST00000364348 109 ntBASIC1.07□□□□□ -2.24
SDC1P18827 Y_RNA.252-201ENST00000364556 101 ntBASIC1.07□□□□□ -2.24
SDC1P18827 RNU6-939P-201ENST00000384634 107 ntBASIC1.07□□□□□ -2.24
SDC1P18827 SNORD41-201ENST00000386967 70 ntBASIC1.07□□□□□ -2.24
SDC1P18827 AC022441.3-201ENST00000605737 136 ntBASIC1.07□□□□□ -2.24
SDC1P18827 SNORD58B-201ENST00000607313 66 ntBASIC1.07□□□□□ -2.24
SDC1P18827 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.07□□□□□ -2.24
SDC1P18827 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.07□□□□□ -2.24
SDC1P18827 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SDC1P18827 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
SDC1P18827 RNU4-79P-201ENST00000362764 141 ntBASIC1.06□□□□□ -2.24
SDC1P18827 RNU1-115P-201ENST00000365329 160 ntBASIC1.06□□□□□ -2.24
SDC1P18827 RNU6-1080P-201ENST00000383982 107 ntBASIC1.06□□□□□ -2.24
SDC1P18827 Y_RNA.570-201ENST00000384750 101 ntBASIC1.06□□□□□ -2.24
SDC1P18827 MIR653-201ENST00000385279 96 ntBASIC1.06□□□□□ -2.24
SDC1P18827 Y_RNA.579-201ENST00000390939 94 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AC093852.1-201ENST00000503587 266 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.06□□□□□ -2.24
SDC1P18827 RNU7-12P-201ENST00000516030 62 ntBASIC1.06□□□□□ -2.24
SDC1P18827 RNU6-976P-201ENST00000516086 111 ntBASIC1.06□□□□□ -2.24
SDC1P18827 RNU6-1116P-201ENST00000517269 99 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AC019288.1-201ENST00000557918 224 ntBASIC1.06□□□□□ -2.24
SDC1P18827 MIR4423-201ENST00000580922 80 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AL117336.2-201ENST00000602435 335 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AL513534.2-201ENST00000603836 250 ntBASIC1.06□□□□□ -2.24
SDC1P18827 LARP7P1-201ENST00000605576 316 ntBASIC1.06□□□□□ -2.24
SDC1P18827 AC004832.4-201ENST00000608952 331 ntBASIC1.06□□□□□ -2.24
SDC1P18827 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
SDC1P18827 Y_RNA.39-201ENST00000362620 98 ntBASIC1.05□□□□□ -2.24
SDC1P18827 Y_RNA.80-201ENST00000362996 102 ntBASIC1.05□□□□□ -2.24
SDC1P18827 RNU6-1175P-201ENST00000365200 107 ntBASIC1.05□□□□□ -2.24
SDC1P18827 Y_RNA.485-201ENST00000384395 102 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AP1B1P2-201ENST00000416196 106 ntBASIC1.05□□□□□ -2.24
SDC1P18827 MRPL35P3-201ENST00000421557 364 ntBASIC1.05□□□□□ -2.24
SDC1P18827 MTATP6P23-201ENST00000440153 476 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AL163540.1-201ENST00000485382 386 ntBASIC1.05□□□□□ -2.24
SDC1P18827 AL133373.1-201ENST00000497098 94 ntBASIC1.05□□□□□ -2.24
SDC1P18827 RNA5SP458-201ENST00000516188 119 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 146.5 ms