| MUC1 | P15941 | AL117336.2-201 | ENST00000602435 | 335 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC092447.9-201 | ENST00000603395 | 144 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AL021879.1-201 | ENST00000611756 | 288 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC240442.1-201 | ENST00000616055 | 283 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| MUC1 | P15941 | 5S_rRNA.13-201 | ENST00000622298 | 123 nt | BASIC | 0.93 | □□□□□ -2.26 | | |
| MUC1 | P15941 | PPP2R5A-205 | ENST00000537030 | 1719 nt | TSL 2 BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | ZNF260-205 | ENST00000593142 | 4047 nt | APPRIS P1 TSL 1 (best) BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.27-201 | ENST00000362540 | 103 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNY1P10-201 | ENST00000363268 | 113 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.361-201 | ENST00000365515 | 120 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | MIR628-201 | ENST00000385229 | 95 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC027119.1-201 | ENST00000440877 | 241 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU7-94P-201 | ENST00000459576 | 63 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC079140.2-201 | ENST00000506193 | 142 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC019288.1-201 | ENST00000557918 | 224 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | MIR5188-201 | ENST00000583467 | 113 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | VN1R91P-201 | ENST00000594377 | 169 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC103810.9-201 | ENST00000606688 | 112 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AL365434.2-201 | ENST00000607979 | 234 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC127459.3-201 | ENST00000624328 | 466 nt | BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | EYS-205 | ENST00000393380 | 5450 nt | TSL 1 (best) BASIC | 0.92 | □□□□□ -2.26 | | |
| MUC1 | P15941 | MGAT4C-209 | ENST00000611864 | 25116 nt | APPRIS P1 TSL 5 BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.172-201 | ENST00000363765 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.252-201 | ENST00000364556 | 101 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.267-201 | ENST00000364679 | 109 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | Y_RNA.419-201 | ENST00000384041 | 102 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-950P-201 | ENST00000384651 | 107 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-376P-201 | ENST00000384731 | 106 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-321P-201 | ENST00000410912 | 106 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC092813.2-201 | ENST00000434540 | 399 nt | TSL 3 BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AL135790.2-201 | ENST00000437701 | 267 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | STAG3L5P-204 | ENST00000443759 | 179 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC245517.4-201 | ENST00000448601 | 281 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-1291P-201 | ENST00000516591 | 104 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RPL21P9-201 | ENST00000556149 | 474 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC005176.2-201 | ENST00000596933 | 147 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | SNORD58B-201 | ENST00000607313 | 66 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC091895.1-201 | ENST00000624494 | 256 nt | BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | CCDC68-202 | ENST00000432185 | 4014 nt | APPRIS P1 TSL 1 (best) BASIC | 0.91 | □□□□□ -2.26 | | |
| MUC1 | P15941 | CTDSPL2-202 | ENST00000558373 | 4255 nt | TSL 1 (best) BASIC | 0.9 | □□□□□ -2.26 | | |
| MUC1 | P15941 | AC005592.1-201 | ENST00000566527 | 1640 nt | BASIC | 0.9 | □□□□□ -2.26 | | |
| MUC1 | P15941 | RNU6-1123P-201 | ENST00000362347 | 106 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | SNORA1B-201 | ENST00000362535 | 133 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNA5SP259-201 | ENST00000365541 | 109 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNY1P14-201 | ENST00000384426 | 108 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-505P-201 | ENST00000384427 | 107 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MT-TD-201 | ENST00000387419 | 68 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL031003.1-201 | ENST00000404229 | 172 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL034345.1-201 | ENST00000407768 | 123 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU5A-5P-201 | ENST00000411054 | 116 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AC078851.1-201 | ENST00000415918 | 298 nt | TSL 3 BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RPEP5-201 | ENST00000441137 | 268 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | LINC01073-201 | ENST00000441659 | 149 nt | TSL 3 BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | PGBD4P5-201 | ENST00000445958 | 426 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.638-201 | ENST00000459374 | 113 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-1337P-201 | ENST00000516525 | 95 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-341P-201 | ENST00000516973 | 96 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-902P-201 | ENST00000517212 | 91 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL080274.1-201 | ENST00000605565 | 220 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL133255.1-201 | ENST00000606374 | 441 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | U91328.3-201 | ENST00000608931 | 354 nt | TSL 3 BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AC040896.1-201 | ENST00000613819 | 479 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | ST7-OT4_1.1-201 | ENST00000615322 | 200 nt | BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | ZNF518A-210 | ENST00000624776 | 7994 nt | APPRIS P1 TSL 1 (best) BASIC | 0.9 | □□□□□ -2.27 | | |
| MUC1 | P15941 | GNPDA2-204 | ENST00000509756 | 5382 nt | APPRIS ALT1 TSL 1 (best) BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MT-ND4-201 | ENST00000361381 | 1378 nt | APPRIS P1 BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MIR337-201 | ENST00000362281 | 93 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.197-201 | ENST00000364004 | 102 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.446-201 | ENST00000384178 | 104 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | SNORD116-13-201 | ENST00000384408 | 92 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.509-201 | ENST00000384506 | 99 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MTND1P14-201 | ENST00000427400 | 950 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | CALM2P4-201 | ENST00000430810 | 426 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL353743.2-204 | ENST00000456242 | 419 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | CFLAR-AS1-202 | ENST00000474886 | 223 nt | TSL 3 BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | OR9P1P-201 | ENST00000496431 | 281 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU4ATAC11P-201 | ENST00000515939 | 126 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-976P-201 | ENST00000516086 | 111 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-1278P-201 | ENST00000516130 | 107 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-436P-201 | ENST00000516171 | 114 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MIR4778-201 | ENST00000577635 | 80 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MIR3937-201 | ENST00000580135 | 106 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | ST7-AS1_1.1-201 | ENST00000611142 | 116 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL078604.3-201 | ENST00000615580 | 211 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AC007485.1-201 | ENST00000616755 | 206 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AC106754.2-201 | ENST00000623006 | 233 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | AL606534.2-204 | ENST00000635008 | 178 nt | BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | ZGRF1-202 | ENST00000309071 | 3347 nt | TSL 1 (best) BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | KLRA1P-203 | ENST00000535939 | 2353 nt | TSL 1 (best) BASIC | 0.89 | □□□□□ -2.27 | | |
| MUC1 | P15941 | NPAT-201 | ENST00000278612 | 6117 nt | APPRIS P2 TSL 1 (best) BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | MIR369-201 | ENST00000362155 | 70 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | SNORD114-7-201 | ENST00000362520 | 77 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.39-201 | ENST00000362620 | 98 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.265-201 | ENST00000364677 | 108 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU1-115P-201 | ENST00000365329 | 160 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | RNU6-53P-201 | ENST00000365367 | 106 nt | BASIC | 0.88 | □□□□□ -2.27 | | |
| MUC1 | P15941 | Y_RNA.458-201 | ENST00000384240 | 102 nt | BASIC | 0.88 | □□□□□ -2.27 | | |