Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SNORA75.3-201ENST00000391231 150 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 RPL23AP50-201ENST00000434149 455 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.83□□□□□ -2.28
CLDN3O15551 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.83□□□□□ -2.28
CLDN3O15551 AC009229.3-201ENST00000608056 282 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 Y_RNA.116-201ENST00000363292 103 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 RNU6-601P-201ENST00000384540 107 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 MIR548K-201ENST00000408406 116 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 RPEP5-201ENST00000441137 268 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.82□□□□□ -2.28
CLDN3O15551 ELOCP24-201ENST00000456370 334 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 RPL7P42-201ENST00000481005 679 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 AL078603.1-201ENST00000603824 313 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 AC005828.6-201ENST00000606610 232 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 AC090517.2-201ENST00000614966 680 ntBASIC0.82□□□□□ -2.28
CLDN3O15551 Y_RNA.86-201ENST00000363020 111 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 Y_RNA.318-201ENST00000365131 97 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 RNU6-1310P-201ENST00000384153 107 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 RNU6-318P-201ENST00000384283 103 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 MIR608-201ENST00000384820 100 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 SNORD12B-201ENST00000410433 91 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 AC107399.1-201ENST00000451226 265 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.81□□□□□ -2.28
CLDN3O15551 MIR151B-201ENST00000584249 96 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 PRELID3BP2-201ENST00000605362 201 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
CLDN3O15551 PISRT1.1-201ENST00000616930 107 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 CASC19-280ENST00000642102 1351 ntBASIC0.81□□□□□ -2.28
CLDN3O15551 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
CLDN3O15551 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
CLDN3O15551 HSBP1P2-201ENST00000299671 229 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 Y_RNA.330-201ENST00000365230 109 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 Y_RNA.336-201ENST00000365307 109 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CLDN3O15551 AL354751.2-201ENST00000415471 210 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 RPS20P10-201ENST00000451209 253 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 AC114811.1-201ENST00000507207 168 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 RNU6-718P-201ENST00000516166 105 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 AC011604.1-201ENST00000545978 196 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.8□□□□□ -2.28
CLDN3O15551 AL391903.3-201ENST00000612158 163 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 MIR6835-201ENST00000621552 64 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 AC027279.3-201ENST00000625055 122 ntBASIC0.8□□□□□ -2.28
CLDN3O15551 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.8□□□□□ -2.28
CLDN3O15551 SNORD114-7-201ENST00000362520 77 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 Y_RNA.243-201ENST00000364481 109 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 RNU6-1215P-201ENST00000384441 102 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 RNU6-1105P-201ENST00000384774 107 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR452-201ENST00000385020 85 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR548F1-201ENST00000408667 84 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 RNA5SP511-201ENST00000410487 115 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MTND3P10-201ENST00000450967 341 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.79□□□□□ -2.28
CLDN3O15551 AC136628.3-201ENST00000521868 290 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 DEFB108E-201ENST00000524692 240 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 AC023442.1-201ENST00000531247 422 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR3192-201ENST00000584920 77 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.79□□□□□ -2.28
CLDN3O15551 MIR1244-1-201ENST00000612829 85 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC0.79□□□□□ -2.28
CLDN3O15551 AC092794.2-201ENST00000620933 563 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 AL008636.1-201ENST00000625038 1018 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR1244-3-201ENST00000635744 85 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR1244-2-201ENST00000636449 85 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 MIR1244-4-202ENST00000636813 85 ntBASIC0.79□□□□□ -2.28
CLDN3O15551 SNORD116-4-201ENST00000384733 96 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 MTND3P8-201ENST00000412909 339 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.78□□□□□ -2.28
CLDN3O15551 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.78□□□□□ -2.28
CLDN3O15551 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.78□□□□□ -2.28
CLDN3O15551 RNU6-408P-201ENST00000515910 100 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 RNA5SP220-201ENST00000516298 104 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 RNA5SP255-201ENST00000516370 107 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 RNU6-307P-201ENST00000516743 106 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 SNORA4-201ENST00000584302 138 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 AC005899.2-201ENST00000584353 90 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 AC002553.4-201ENST00000616896 331 ntBASIC0.78□□□□□ -2.28
CLDN3O15551 Y_RNA.339-201ENST00000365325 102 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 Y_RNA.482-201ENST00000384377 111 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 RNY1P14-201ENST00000384426 108 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 MIR605-201ENST00000385078 83 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 MIR518E-201ENST00000385252 88 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 MIR1277-201ENST00000408536 78 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 FABP5P4-201ENST00000437203 171 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 RPS4XP11-201ENST00000446897 772 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 MIR2053-201ENST00000459295 91 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 SNORA70.12-201ENST00000516084 153 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 AF235103.2-201ENST00000525753 346 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.77□□□□□ -2.29
CLDN3O15551 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 AC004467.1-201ENST00000615678 330 ntBASIC0.77□□□□□ -2.29
CLDN3O15551 RNU6-1301P-201ENST00000362724 104 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 RNA5SP264-201ENST00000363115 107 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 Y_RNA.404-201ENST00000383978 102 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 MIR516B2-201ENST00000385190 85 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 MIR1298-201ENST00000408783 112 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 AL606490.4-201ENST00000423117 127 ntBASIC0.76□□□□□ -2.29
CLDN3O15551 AL162725.1-201ENST00000435405 301 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 154.5 ms