Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
TRIM38O00635 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
TRIM38O00635 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
TRIM38O00635 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
TRIM38O00635 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.46□□□□□ -2.01
TRIM38O00635 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.46□□□□□ -2.01
TRIM38O00635 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.46□□□□□ -2.02
TRIM38O00635 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.46□□□□□ -2.02
TRIM38O00635 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
TRIM38O00635 AL391516.1-201ENST00000554380 2449 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 SNORA3A-201ENST00000364113 130 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 snoU2_19.4-201ENST00000364329 80 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 SNORA67.1-201ENST00000364749 141 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 MIR1262-201ENST00000408276 93 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 MIR1283-1-201ENST00000408494 87 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 RNU2-54P-201ENST00000410299 190 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 AC074290.1-201ENST00000448883 135 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 snoU13.26-201ENST00000459452 105 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 AC091179.3-201ENST00000474761 144 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 UBL5P3-201ENST00000475112 231 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 RPS29P21-201ENST00000496272 170 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 RNU2-34P-201ENST00000516534 121 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 CYCSP23-201ENST00000519781 313 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.46□□□□□ -2.02
TRIM38O00635 AC112693.2-201ENST00000556538 232 ntBASIC2.46□□□□□ -2.02
TRIM38O00635 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
TRIM38O00635 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
TRIM38O00635 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.45□□□□□ -2.02
TRIM38O00635 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
TRIM38O00635 RNU6-1298P-201ENST00000362456 101 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 RNU4-10P-201ENST00000364383 140 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 Y_RNA.329-201ENST00000365209 107 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.45□□□□□ -2.02
TRIM38O00635 RN7SL636P-201ENST00000497504 294 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.45□□□□□ -2.02
TRIM38O00635 Y_RNA.797-201ENST00000515977 94 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 Y_RNA.686-201ENST00000516548 134 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 AC009127.3-201ENST00000570531 403 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 MIR4753-201ENST00000585119 83 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.45□□□□□ -2.02
TRIM38O00635 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.45□□□□□ -2.02
TRIM38O00635 AC068205.3-201ENST00000636385 468 ntBASIC2.45□□□□□ -2.02
TRIM38O00635 AC007336.1-201ENST00000576365 3828 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.44□□□□□ -2.02
TRIM38O00635 Y_RNA.179-201ENST00000363844 90 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 RNU6-801P-201ENST00000364087 105 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 Y_RNA.498-201ENST00000384460 102 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 RNU6-160P-201ENST00000384591 107 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 Y_RNA.542-201ENST00000384641 111 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 Y_RNA.572-201ENST00000384757 98 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 HMGN2P39-201ENST00000398005 273 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 RPL30P13-201ENST00000418873 348 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 EBAG9P1-201ENST00000418955 543 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.44□□□□□ -2.02
TRIM38O00635 RNU6-1211P-201ENST00000459179 105 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 RNU4-57P-201ENST00000515980 135 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 MIR4431-201ENST00000579990 94 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.44□□□□□ -2.02
TRIM38O00635 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.44□□□□□ -2.02
TRIM38O00635 MIR7843-201ENST00000622274 79 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.44□□□□□ -2.02
TRIM38O00635 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
TRIM38O00635 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
TRIM38O00635 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.43□□□□□ -2.02
TRIM38O00635 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
TRIM38O00635 RNU6-727P-201ENST00000363592 107 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU6-899P-201ENST00000363947 107 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU6-454P-201ENST00000364292 107 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 Y_RNA.420-201ENST00000384043 110 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 SNORA67.2-201ENST00000384300 149 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU6-578P-201ENST00000390980 103 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 SNORA26.5-201ENST00000391215 123 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 AL357134.1-201ENST00000445848 426 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RPS20P10-201ENST00000451209 253 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU7-197P-201ENST00000458836 62 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU1-131P-201ENST00000458943 161 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 snoU13.15-201ENST00000459407 104 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 HMGN2P9-201ENST00000476875 229 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 RNU6-436P-201ENST00000516171 114 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 AC021269.2-201ENST00000532318 330 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 DNAJC19P2-201ENST00000593340 302 ntBASIC2.43□□□□□ -2.02
TRIM38O00635 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.43□□□□□ -2.02
TRIM38O00635 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.42□□□□□ -2.02
TRIM38O00635 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
TRIM38O00635 SNORA63.4-201ENST00000362763 126 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 AC011753.1-201ENST00000451001 220 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TRIM38O00635 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.42□□□□□ -2.02
TRIM38O00635 SCARNA8-201ENST00000515924 131 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 SNORA31.11-201ENST00000516528 139 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 RNA5SP82-201ENST00000516707 92 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 RNU2-12P-201ENST00000517216 168 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 SNORA31.25-201ENST00000517242 134 ntBASIC2.42□□□□□ -2.02
TRIM38O00635 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.42□□□□□ -2.02
TRIM38O00635 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.42□□□□□ -2.02
TRIM38O00635 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.42□□□□□ -2.02
TRIM38O00635 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.42□□□□□ -2.02
TRIM38O00635 MIR4744-201ENST00000581563 82 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms