Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL133373.1-201ENST00000497098 94 ntBASIC1.15□□□□□ -2.23
FOXA2Q9Y261 RNU6-165P-201ENST00000517170 99 ntBASIC1.15□□□□□ -2.23
FOXA2Q9Y261 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.15□□□□□ -2.23
FOXA2Q9Y261 U8.1-201ENST00000362843 134 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 RNY3P11-201ENST00000364153 102 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.384-201ENST00000383909 102 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.387-201ENST00000383918 102 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 RNU5A-5P-201ENST00000411054 116 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.621-201ENST00000411065 96 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 SNRPGP13-201ENST00000442212 177 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 HSPE1P13-201ENST00000451143 297 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 ELOCP24-201ENST00000456370 334 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 RNA5SP61-201ENST00000516453 100 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 RNU2-12P-201ENST00000517216 168 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 AC090049.2-201ENST00000550377 109 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
FOXA2Q9Y261 MIR4303-201ENST00000581299 66 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 AC005176.2-201ENST00000596933 147 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 AL645939.4-201ENST00000604495 135 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 BX284668.6-201ENST00000606899 438 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 AL512598.1-201ENST00000610158 273 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 U2.1-201ENST00000618978 145 ntBASIC1.14□□□□□ -2.23
FOXA2Q9Y261 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.142-201ENST00000363491 102 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 RNU6-324P-201ENST00000363957 106 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 SNORD115-30-201ENST00000364117 82 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 SNORA2.2-201ENST00000365473 135 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 SNORA25-201ENST00000384384 134 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 MRPS18CP6-201ENST00000423587 223 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 AC099799.1-201ENST00000439809 192 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 RBMX2P4-201ENST00000441256 376 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 RNU6-947P-201ENST00000516264 106 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 RNU1-92P-201ENST00000517017 135 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 AL358944.1-201ENST00000528537 144 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 AC008269.2-201ENST00000561915 1105 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 MIR4769-201ENST00000584126 77 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 MIR7974-201ENST00000615835 79 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 MTND4LP32-201ENST00000636111 270 ntBASIC1.13□□□□□ -2.23
FOXA2Q9Y261 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
FOXA2Q9Y261 RNU6-490P-201ENST00000362985 107 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 RNU4-13P-201ENST00000364019 141 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 MIR653-201ENST00000385279 96 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 MIR758-201ENST00000390227 88 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 AL354751.2-201ENST00000415471 210 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.12□□□□□ -2.23
FOXA2Q9Y261 AC104332.1-201ENST00000440471 797 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 RPL39P39-201ENST00000455840 151 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 SNORA31.4-201ENST00000516049 129 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 RNU6-1337P-201ENST00000516525 95 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 AC005730.3-201ENST00000583067 366 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 AL357312.1-201ENST00000603879 298 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 AL022345.2-201ENST00000606307 135 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 MIR1302-1-201ENST00000637932 143 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 ZNF209P-201ENST00000593450 2304 ntBASIC1.12□□□□□ -2.23
FOXA2Q9Y261 RNU4-41P-201ENST00000364426 143 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 SNORA17.3-201ENST00000391159 129 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 AL031003.1-201ENST00000404229 172 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 RNA5SP511-201ENST00000410487 115 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA2Q9Y261 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.11□□□□□ -2.23
FOXA2Q9Y261 SNORA31.2-201ENST00000516019 134 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 SNORA70.22-201ENST00000517160 124 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.11□□□□□ -2.23
FOXA2Q9Y261 AC055872.1-201ENST00000570978 278 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 AC240442.1-201ENST00000616055 283 ntBASIC1.11□□□□□ -2.23
FOXA2Q9Y261 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.11□□□□□ -2.23
FOXA2Q9Y261 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.11□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.140-201ENST00000363474 103 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-20P-201ENST00000384106 107 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-163P-201ENST00000384396 106 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-1105P-201ENST00000384774 107 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNY4P36-201ENST00000391116 96 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 MIR891A-201ENST00000401237 79 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU2-54P-201ENST00000410299 190 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AC108667.1-201ENST00000428618 249 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AL162725.1-201ENST00000435405 301 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AC009474.2-201ENST00000451383 136 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AL163540.1-201ENST00000485382 386 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNA5SP458-201ENST00000516188 119 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-917P-201ENST00000516294 104 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-155P-201ENST00000516347 100 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 RNU6-911P-201ENST00000516523 104 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 MIR4659A-201ENST00000580269 81 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 UBE2V2P2-201ENST00000587677 504 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AL117336.2-201ENST00000602435 335 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 AC011476.5-201ENST00000615594 130 ntBASIC1.1□□□□□ -2.23
FOXA2Q9Y261 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA2Q9Y261 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.101-201ENST00000363154 102 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 SNORD68-201ENST00000363214 84 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNU6-626P-201ENST00000363354 107 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.361-201ENST00000365515 120 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 Y_RNA.390-201ENST00000383932 102 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 SNORD41-201ENST00000386967 70 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RNU4-62P-201ENST00000410125 130 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 AC096644.2-201ENST00000429278 159 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 Z98949.2-201ENST00000440996 144 ntBASIC1.09□□□□□ -2.23
FOXA2Q9Y261 RPEP5-201ENST00000441137 268 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms