Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SNORA25.1-201ENST00000362326 128 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.124-201ENST00000363339 93 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU6-271P-201ENST00000363858 105 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU6-324P-201ENST00000363957 106 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNA5SP493-201ENST00000364115 91 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU1-96P-201ENST00000364163 162 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.310-201ENST00000365063 113 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU4-52P-201ENST00000384209 138 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RPS26P55-201ENST00000471178 356 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS4AQ9UN37 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS4AQ9UN37 RNU6-794P-201ENST00000517261 64 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 MIR3126-201ENST00000577443 74 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 BX284668.6-201ENST00000606899 438 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 AL078604.3-201ENST00000615580 211 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 AC012640.5-201ENST00000623897 319 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 AC022513.1-201ENST00000624512 117 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 MIR338-201ENST00000636369 67 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 CENPCP1-201ENST00000533085 2578 ntBASIC2.21□□□□□ -2.06
VPS4AQ9UN37 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 snoU2-30.2-201ENST00000362805 70 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 RNU6-117P-201ENST00000365415 107 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 SNORD23.1-201ENST00000408212 104 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 HMGN2P34-201ENST00000437647 269 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 SNORD2.1-201ENST00000458762 69 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 AC090255.1-201ENST00000495779 349 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 AC141273.2-201ENST00000618989 130 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 U6.73-201ENST00000619194 103 ntBASIC2.2□□□□□ -2.06
VPS4AQ9UN37 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
VPS4AQ9UN37 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU1-58P-201ENST00000362413 163 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.164-201ENST00000363709 102 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU6-801P-201ENST00000364087 105 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU6-740P-201ENST00000364734 105 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 SNORA20.1-201ENST00000364790 130 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.456-201ENST00000384232 111 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.477-201ENST00000384352 108 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 HMGN2P39-201ENST00000398005 273 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 MIR1283-2-201ENST00000408621 87 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AC024067.1-201ENST00000426199 223 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RPS15AP28-201ENST00000435088 386 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RPL36AP21-201ENST00000490372 323 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNA5SP20-201ENST00000515976 84 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU6-1146P-201ENST00000516282 102 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 RNU6-111P-201ENST00000517179 105 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AC136628.3-201ENST00000521868 290 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AL031274.2-201ENST00000599419 203 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AC011921.3-201ENST00000605540 361 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AC103810.6-201ENST00000606708 136 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 AC046143.2-201ENST00000609789 160 ntBASIC2.19□□□□□ -2.06
VPS4AQ9UN37 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
VPS4AQ9UN37 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
VPS4AQ9UN37 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.122-201ENST00000363331 96 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.277-201ENST00000364754 102 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 SNORA40.19-201ENST00000390846 128 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 RNU2-14P-201ENST00000411053 191 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 RNU6-847P-201ENST00000411115 108 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 HMGN2P38-201ENST00000423806 265 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.18□□□□□ -2.06
VPS4AQ9UN37 RNU7-128P-201ENST00000517247 62 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 AC005357.1-201ENST00000588399 301 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 AL162424.1-201ENST00000602325 221 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 U6.108-201ENST00000637764 58 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 ZNF720P1-201ENST00000562403 1939 ntBASIC2.18□□□□□ -2.06
VPS4AQ9UN37 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS4AQ9UN37 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS4AQ9UN37 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.76-201ENST00000362931 109 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU1-22P-201ENST00000363334 158 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.140-201ENST00000363474 103 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.172-201ENST00000363765 102 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU6-514P-201ENST00000384208 107 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU6-651P-201ENST00000411040 105 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNA5SP270-201ENST00000411361 118 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 AC108059.2-201ENST00000434626 151 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 ATP5J2P3-201ENST00000451550 258 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 Y_RNA.637-201ENST00000459424 114 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU6-1337P-201ENST00000516525 95 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU7-193P-201ENST00000516723 65 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 AL137100.2-201ENST00000555786 315 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 AL512605.2-201ENST00000592972 256 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS4AQ9UN37 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS4AQ9UN37 MIR6766-201ENST00000622641 72 ntBASIC2.17□□□□□ -2.06
VPS4AQ9UN37 RNU6-338P-201ENST00000383888 105 ntBASIC2.16□□□□□ -2.06
VPS4AQ9UN37 RNU6-662P-201ENST00000384253 104 ntBASIC2.16□□□□□ -2.06
VPS4AQ9UN37 MIR518A2-201ENST00000384966 87 ntBASIC2.16□□□□□ -2.06
VPS4AQ9UN37 BX510359.4-201ENST00000423750 193 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms